View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_64 (Length: 398)
Name: NF1773_low_64
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 9970309 - 9970682
Alignment:
| Q |
9 |
caagaatatccatgattgcatacgatgtacaagaaataatttctttattagtcaaaaacatttagatagttctactagccataaaaacaccaagagaact |
108 |
Q |
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| T |
9970309 |
caagtatatccatgattgcatacgatgtacaagaaataatttcttcattagtcaaaaacatttagatagttctactagccataaaaacaccaagagaact |
9970408 |
T |
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| Q |
109 |
gtattaacgacggtcattgacaacaggcttcaaagactgtaacaatattcatctcagaattacatattacattaactgtnnnnnnnttactccatcaaat |
208 |
Q |
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| T |
9970409 |
gtattaacgacggtcattgaccacaggcttcaaagactgtaacaatattcatctcagaattacatattacattaactgtaaaaaaattactccatcaaat |
9970508 |
T |
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| Q |
209 |
aataccaagggaaatatccactacacgagtacttcctgaagcagaaactaatcaattaagtatcaaattcaaattaaaattcagagcataatttcactat |
308 |
Q |
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| T |
9970509 |
aacaccaagggaaatatccactacacgagtacttcctgaagcagaaactaatcaattaagtatcaaattcaaattaaaattcagagcataatttcactat |
9970608 |
T |
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| Q |
309 |
acctcagatgacctttgctagctattgatgcatcaggttttctcgtaccatttcgagcagcttcttgctgttca |
382 |
Q |
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| T |
9970609 |
accttagatgacctttgctagctattgatgcatcaggttttctcgtaccatttcgagcagcttcttgctgttca |
9970682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 18202817 - 18202755
Alignment:
| Q |
320 |
cctttgctagctattgatgcatcaggttttctcgtaccatttcgagcagcttcttgctgttca |
382 |
Q |
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| T |
18202817 |
ccttttctagatataggtgcatcaggttttctcgtaccttttcgagcagcttcttgctgttca |
18202755 |
T |
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