View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_69 (Length: 390)
Name: NF1773_low_69
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 46662387 - 46662114
Alignment:
| Q |
1 |
atgatatcccggcatcaagctgcaaataacctgaaacacagaaggacagccttccatcggagacatgggtatatgctctgaccatctgttcacatacaca |
100 |
Q |
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| T |
46662387 |
atgatatcccggcatcaagctgcaaataacctgaaacacagaaggacatccttccatcggagacatgggtatatgctctgaccatctgttcacatacaca |
46662288 |
T |
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| Q |
101 |
caaaaattaacattagtaaatcaaagttaaatttttcatcaataaacaaaaacaaagccatgaatgaatcgtattaagtaagaaagcaagtagaacctgg |
200 |
Q |
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| T |
46662287 |
caaaaattaacattagtaaatcaaatttaaatttttcatcaataaacaaaaacaaagccatgaatgaatcgtattaagtaagaaagcaagtagaacctgg |
46662188 |
T |
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| Q |
201 |
tgaaagagccaatgagataaactcttgttcctccataaggccaaacaaaacgcttcggaattaaaatgggtcct |
274 |
Q |
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| T |
46662187 |
tgaaagagccaatgagataaactcttgttcctccataaggccaaacaaaacgcttcggaattaaaatgggtcct |
46662114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 46662086 - 46662020
Alignment:
| Q |
305 |
cctccaacactctctgttaacgaaggatacattttttcaattcagaaagcacgaatctcacaacaat |
371 |
Q |
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| T |
46662086 |
cctccaacactgtctgttaacgaaggatacattttttcaattcagaaagcacgaatctcacaacaat |
46662020 |
T |
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