View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_72 (Length: 378)
Name: NF1773_low_72
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_72 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 1732557 - 1732214
Alignment:
| Q |
21 |
agtatcatttaacttaattttcaactttatgttggtcatttatatatttgtttttaactaattagccttacattttctaaaatgtttatattgagtgcag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1732557 |
agtatcatttaacttaattttcaactttatgttggtcatttatatatttgtttttaacaaattagccttacattttctaaaatgtttatattgagtgcag |
1732458 |
T |
|
| Q |
121 |
actaatgacatgggttggaataggcgctaggccataaattcttgttggacggtctgatctattctcatgctggagttttactttatnnnnnnntagggaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1732457 |
actaatgacatgggttggaataggcgctaggccataaattcttgttggacggtctgatctattctcatgctggagttttactttataaaaaaatagggaa |
1732358 |
T |
|
| Q |
221 |
aagtctaaaagagtaaattcaaccattatgttatacaagttgtgattttttatagttaaaaactcaaaaatgtctttgctatagatgtggatggtgaaaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1732357 |
aagtctaaaagagtaaattcaaccattatgttatacaagttgtgattttttataattaaaaactcaaaaatgtctttgctatagatgtggatggtgaaaa |
1732258 |
T |
|
| Q |
321 |
agatatgattctcgttgaaatgtaattcacaaagatgaaaaaca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1732257 |
agatatgattctcgttgaaatgtaattcacaaagatgaaaaaca |
1732214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41384186 - 41384218
Alignment:
| Q |
1 |
ttataattagggacggagggagtatcatttaac |
33 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
41384186 |
ttataattagggacggagggagtataatttaac |
41384218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University