View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_74 (Length: 374)
Name: NF1773_low_74
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_74 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 119 - 357
Target Start/End: Complemental strand, 31872829 - 31872590
Alignment:
| Q |
119 |
ataatttgagaaaataaaa-taattaaatgtacatatgtgttagtgacgtgtattggtcacgtcttcaatcttaagtgtcagtgttatatagttgtgtct |
217 |
Q |
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| T |
31872829 |
ataatttgagaaaataaaagtaattgaatgtacatatgtgttagtgacgtgtattggtcacgtcttcaatctaaagtgttagtgttatatagttgtgtct |
31872730 |
T |
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| Q |
218 |
gctttgctttttattaggcactgaccaattatagaatgcagataaatctgagtttgaggaaaatgaatggtatttctttagcccaagagaaagaaagtat |
317 |
Q |
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| T |
31872729 |
gctttgctttttattaggcactgaccaattatagaatgcagataaatctgagtttgaggaaaatgaatggtatttctttagcccaagagaaagaaagtat |
31872630 |
T |
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| Q |
318 |
ccaaatggggtgaggcctaatagagcaactttgtctggat |
357 |
Q |
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| T |
31872629 |
ccaaatggggtgaggcctaatagagcaactttgtctggat |
31872590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 42088636 - 42088765
Alignment:
| Q |
20 |
ataatattaatatttaagaaaccaaagtccatatatatactacgaaaaactaatacatgcatcgagagactaacattaatacatcgacaccgcatctgga |
119 |
Q |
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| T |
42088636 |
ataatattaatatctaagaaaccaaagtccatatatatactacgaaatactaatacatgcatcgagagactaacattaacacatcgacaccgcatttgga |
42088735 |
T |
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| Q |
120 |
taatttgagaaaataaaataattaaatgta |
149 |
Q |
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| T |
42088736 |
taatttgagaaaataaaataattgaatgta |
42088765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 42088880 - 42088920
Alignment:
| Q |
109 |
ccgcatctggataatttgagaaaataaaataattaaatgta |
149 |
Q |
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| T |
42088880 |
ccgcatctgtataatttaagaaaataaaataattgaatgta |
42088920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 18428814 - 18428719
Alignment:
| Q |
252 |
aatgcagataaatctgagtttgaggaaaatgaatggtatttctttagcccaagagaaagaaagtatccaaatggggtgaggcctaatagagcaact |
347 |
Q |
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| T |
18428814 |
aatgcagataaatcaggctttggagaaaatgaatggtatttttttactccaagagaaagaaagtatccaaatggggtgagaccaaatagagcaact |
18428719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 33727830 - 33727874
Alignment:
| Q |
282 |
gaatggtatttctttagcccaagagaaagaaagtatccaaatggg |
326 |
Q |
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| T |
33727830 |
gaatggtatttctttagtccaagagataggaagtatccaaatggg |
33727874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 151449 - 151419
Alignment:
| Q |
119 |
ataatttgagaaaataaaataattaaatgta |
149 |
Q |
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| T |
151449 |
ataatttgagaaaataaaataattaaatgta |
151419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 40733870 - 40733808
Alignment:
| Q |
282 |
gaatggtatttctttagcccaagagaaagaaagtatccaaatggggtgaggcctaatagagca |
344 |
Q |
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| T |
40733870 |
gaatggtatttctttactccaagggacagaaagtatcccaaaggattgaggcctaatagagca |
40733808 |
T |
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