View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_76 (Length: 372)
Name: NF1773_low_76
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 40632346 - 40632709
Alignment:
| Q |
1 |
ttcacttttcttcatgatgagaatgatatcccttatggg-agtgttaacttatttccaattggctgtactgggacacctggtgaaaa-aaggtccttaac |
98 |
Q |
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| T |
40632346 |
ttcacttttcttcatgatgagaataatatcccttatggggagtgttagcttatttccaattggctgtactggaacacctagtgaaaaaaaggtccttaac |
40632445 |
T |
|
| Q |
99 |
agatggttgcatcaaaagtcttcaaattttaagtacttcaaacaactcagatgtggatcctttggtttctatatatgcaagtgaataattctagtatgat |
198 |
Q |
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| T |
40632446 |
agatggttgcatcaaaagtcttcaaattttaagtgcttcaaacaactcagatgtggatcctttggtttctatatatgcaagtgaataattctagtatgat |
40632545 |
T |
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| Q |
199 |
acaggacagacccttagttgtgcctattactagtgtggatgaagaattaagtctggataagagagtcataggtggaaagtcttgtgactctagtaaccac |
298 |
Q |
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| T |
40632546 |
acaggacagacccttagttgtgcctattactagtgtggatgaagaattaagtctggataagagagtcataggtggaaagtcttgtgacactagtaaccac |
40632645 |
T |
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| Q |
299 |
tcagcaggcaaccttaaaagtgtgaagatattgaagaaattttggggtgatgttgaggatgatg |
362 |
Q |
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| T |
40632646 |
tcagcaggcagccttaaaagtgtgaagatattgaagaaattttggggtgatgttgaggatgatg |
40632709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 360
Target Start/End: Complemental strand, 41411851 - 41411723
Alignment:
| Q |
232 |
tgtggatgaagaattaagtctggataagagagtcataggtggaaagtcttgtgactctagtaaccactcagcaggcaaccttaaaagtgtgaagatattg |
331 |
Q |
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|||||||||||| || ||||||| || ||||| ||||||||||||||| ||||| ||||||||||||||| | || ||||||||||||| ||||| || |
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| T |
41411851 |
tgtggatgaagacttgagtctgggcaaaagagttataggtggaaagtctggtgacattagtaaccactcagctgccagccttaaaagtgtgcagataatg |
41411752 |
T |
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| Q |
332 |
aagaaattttggggtgatgttgaggatga |
360 |
Q |
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| T |
41411751 |
aaggaattttggggtgatgttgaggatga |
41411723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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