View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_77 (Length: 369)
Name: NF1773_low_77
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 9364089 - 9363747
Alignment:
| Q |
20 |
tacaaacttcattccctggaaacatgacaagttgcataaatcatacatctcaaattcaagcatttgtcaaatcatcagtatttgatcctgcaatgagcaa |
119 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9364089 |
tacaaacttcattcccaggaaatatgacaagttgcataaatcatacatctcaaattcaagcatttgtcaaatcatcagtatttgatcctgcaatgagcaa |
9363990 |
T |
|
| Q |
120 |
gtcatctacatacaaacataaaattacctgattttgcaagtcggaaaagtgtatagactcatttaacatttatagctctcttatcggatatgctaacaag |
219 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9363989 |
gtcatctacatacaagcataaaatgacctgattttgcaagtcggaaaagtgtatagactcatttaacatttatagatctcttatcggatatgctaacaag |
9363890 |
T |
|
| Q |
220 |
ctcccaggtg-nnnnnnnctctctatagctttcagctcctctttcatagcagctaactagtttgaatccttcgttgcttgattcaaatcaagtggttctg |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363889 |
ctcccaggtgttttttttctctctatagctttcagctcctctttcatagcagctaactagtttgaatccttcgttgcttgattcaaatcaagtggttctg |
9363790 |
T |
|
| Q |
319 |
attcagcaagcatagcgtcttttataagattaccttcttcatc |
361 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363789 |
attaagcaagcatagcgtcttttataagattaccttcttcatc |
9363747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University