View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_78 (Length: 367)

Name: NF1773_low_78
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_78
NF1773_low_78
[»] chr3 (9 HSPs)
chr3 (18-356)||(38041665-38042015)
chr3 (18-356)||(38038272-38038622)
chr3 (18-356)||(50906890-50907231)
chr3 (43-356)||(38032035-38032357)
chr3 (72-356)||(38027235-38027530)
chr3 (99-356)||(38034863-38035130)
chr3 (218-356)||(50913433-50913571)
chr3 (43-356)||(55082770-55083080)
chr3 (74-122)||(50913276-50913324)
[»] chr8 (1 HSPs)
chr8 (18-356)||(21607981-21608332)
[»] chr2 (1 HSPs)
chr2 (189-278)||(3072268-3072364)
[»] chr4 (2 HSPs)
chr4 (259-357)||(27421999-27422097)
chr4 (259-356)||(27424579-27424676)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 38041665 - 38042015
Alignment:
Q  18 gtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatcattct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38041665 gtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacagtctatatatactcatcattgggtttacaagcaacacaaatcattct 38041764  T
Q  118 tacctcaaagcatcataactcaag-----ttattttttctactacttcgttgagatcattcagtcgtgaagaaacaaaacaagaatgggttttcgcttac 212  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041765 tacctcaaagcatcataactcaagttaacttattttttctactacttcgttgagatcattcagtcgtgaagaaacaaaacaagaatgggttttcgcttac 38041864  T
Q  213 ctggt-------gatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaa 305  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041865 ctggtattagacgatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaa 38041964  T
Q  306 gaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041965 gaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 38042015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 38038272 - 38038622
Alignment:
Q  18 gtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatcattct 117  Q
    ||||||| |||||||||| ||||| ||| ||||||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||||||||||    
T  38038272 gtctccaactaaacccattgaacagctccttcaccatacaatcggtttgcaaagtctatatatacccaccattgggtttagaagcaacacaaatcattct 38038371  T
Q  118 tacctcaaagcatcataactcaag-----ttattttttctactacttcgttgagatcattcagtcgtgaagaaacaaaacaagaatgggttttcgcttac 212  Q
    |||| | ||||||||||| |||||     ||||||||||||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||    
T  38038372 taccccgaagcatcataattcaagttcacttattttttctactacttctttgagatcattctgttgtgaagaagcaaaaaaagaatgggttttcgcttac 38038471  T
Q  213 ctggt-------gatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaa 305  Q
    |||||       |||||||||||| |||| |||| ||||| ||||||||| ||||||||||||||||| || | || ||||||||||||||| ||||||     
T  38038472 ctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagtggaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgag 38038571  T
Q  306 gaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
     |||||| |||||||| || ||||||||||||||||||| |||||||||||    
T  38038572 aaggttcatgattccaatatcattcttgaatgagcctttatttcaagaatt 38038622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 50907231 - 50906890
Alignment:
Q  18 gtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatcattct 117  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||| |  | ||||||||||| |||||||||||||| || ||||||| | |||||     
T  50907231 gtctccaactaaacccattgaacaactcattcaccatacaattggttttcgaagtctatatatacacatcattgggtttagaaacaacacataccattcc 50907132  T
Q  118 tacctcaaagcatcataactcaagttattttttctactacttcgttgagatcattcagtcgtgaagaaacaaaacaagaatgggttttcgcttacctggt 217  Q
    ||| |||||||||||||| |     |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50907131 tacttcaaagcatcataatt-----tattatttctactacttctttgagatcattcagtcgtcaagaaacaaaacaagaatgggttttcgcttacctggt 50907037  T
Q  218 ----ga---tcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgtt-ggagaggaaatgaagagg 309  Q
        ||   |||||||||| |||| |||| || || ||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||   |||||    
T  50907036 attagacagtcatcatttagtgcaagtcaatcgtctagcaaacaagtggacgtcccaaaaggctattttgcggtgtatgttaggagaggaaaatgagagg 50906937  T
Q  310 ttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
    || |||||||||||  ||||||||||||||||||  |||||||||||    
T  50906936 tttttgattccagtgtcattcttgaatgagccttcatttcaagaatt 50906890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 43 - 356
Target Start/End: Original strand, 38032035 - 38032357
Alignment:
Q  43 ctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatcattcttacctcaaagca-tcataactcaag 141  Q
    |||||||||||||||||||||||    | ||||||||||| | || |||| |||||||||||||||||| ||||||||||  ||||| ||| ||||||||    
T  38032035 ctcattcaccatacaattggtttcttaagtctatatatacccctctttggatttacaagcaacacaaataattcttaccttgaagcaatcagaactcaag 38032134  T
Q  142 ttattttttctactacttcgttgagat--cattcagtcgtgaagaaacaaaa-caagaatgggttttcgcttacctggt-------gatcatcatttact 231  Q
    ||   || |  |||||||| |||||||  ||||| || |||||||||||||| ||||||||||||||||||||||||||       |||||||||||| |    
T  38032135 ttcacttat--actacttctttgagatttcattctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctggtattagacgatcatcatttagt 38032232  T
Q  232 gcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattct 331  Q
    ||| |||| ||||| | ||||||| ||||||| |||||||||||| | || ||||||||||||||| ||||||  |||||  ||||||||||| ||||||    
T  38032233 gcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattct 38032332  T
Q  332 tgaatgagcctttgtttcaagaatt 356  Q
    ||||||||||||| |||||||||||    
T  38032333 tgaatgagcctttatttcaagaatt 38032357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 72 - 356
Target Start/End: Original strand, 38027235 - 38027530
Alignment:
Q  72 tctatatatactcatcattgggtttacaagcaacacaaatcattcttacctcaaagc-atcataactcaagt--tattttttctactacttcgttgagat 168  Q
    ||||||||||| | ||||||| ||| |||||||||||||| |||||||||| ||||| |||| |||||||||    ||| |||||||||||| |||||||    
T  38027235 tctatatatacccctcattggattttcaagcaacacaaataattcttaccttaaagcaatcagaactcaagtccactttcttctactacttctttgagat 38027334  T
Q  169 cattcagtcgtgaagaaac-aaaacaagaatgggttttcgcttacctggt-------gatcatcatttactgcaggtcagtcatccagcaaacaaatgga 260  Q
    ||||| || |||||||||| |||||||||||||||||||||||||||| |       |||||||| ||| |||| |||| ||||| ||||||||| ||||    
T  38027335 cattctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtgga 38027434  T
Q  261 agtcccaaaaggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
    ||| ||||||||| || | || ||||||||||||||| ||||||  |||||  ||||||| ||| ||||||||||||||||||| |||||||||||    
T  38027435 agttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaatt 38027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 99 - 356
Target Start/End: Original strand, 38034863 - 38035130
Alignment:
Q  99 aagcaacacaaatcattcttacctcaaagcatcataactcaagtta------ttttttctactacttcgttgagatcattcagtcgtgaagaaacaaaac 192  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||       |||||||||||||||   ||||||||||| ||  ||||||| ||||||    
T  38034863 aagcaacacaaatcattcttacctcgaagcatcataattcaagttcacttatttttttctactactt---tgagatcattctgttctgaagaagcaaaac 38034959  T
Q  193 aagaatgggttttcgcttacctggt-------gatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtg 285  Q
    ||||||||||||||| ||||||| |       |||||||||||| |||| |||| ||||| | ||||||| ||||||||||||||||| || | ||||||    
T  38034960 aagaatgggttttcgtttacctgctattagacgatcatcatttagtgcaagtcaatcatctaacaaacaagtggaagtcccaaaaggccatcttgcggtg 38035059  T
Q  286 tatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
    |||||||||||| |||||   |||||| |||||||| || ||||||||||||||||||| |||||||||||    
T  38035060 tatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaatt 38035130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 50913433 - 50913571
Alignment:
Q  218 gatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaagaggttcttgat 317  Q
    |||||||||||| |||| |||| ||||| |||||| || |||||||||||||||||||| | || ||||||||||||||| |||||||||||||||||||    
T  50913433 gatcatcatttagtgcaagtcaatcatctagcaaagaagtggaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgat 50913532  T
Q  318 tccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
    |||| || ||||||||||||||||||| |||||||||||    
T  50913533 tccaatatcattcttgaatgagcctttatttcaagaatt 50913571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 55083080 - 55082770
Alignment:
Q  43 ctcattcaccatacaattggtttgcacaatctatatata--ctcatcattgggtttacaagcaacacaaatcattcttacctcaaagcatcataactcaa 140  Q
    ||||| ||||||||||||||||| || | ||||||||||  |||||||| | ||||| |||||||| ||||||||| |||||  |||||||| || ||||    
T  55083080 ctcatccaccatacaattggttttcaaagtctatatatatactcatcatcgagtttagaagcaacaaaaatcattcataccttgaagcatcagaattcaa 55082981  T
Q  141 g-----ttattttttctactacttcgttgagatcattcagtcgtgaagaaacaaaacaagaatgggttttcgcttacctggt-------gatcatcattt 228  Q
    |     || | |||||||| ||||| |||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||       |||||||||||    
T  55082980 gctcatttctgttttctaccacttctttgagatcattctgttgtgaagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcattt 55082881  T
Q  229 actgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcat 328  Q
    | |||| |||| ||||| | ||||||| |                 || | || || |||||||||||| |||||||||||||| ||||||||||| |||    
T  55082880 agtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcat 55082798  T
Q  329 tcttgaatgagcctttgtttcaagaatt 356  Q
    | |||||||||||||| |||||||||||    
T  55082797 ttttgaatgagcctttatttcaagaatt 55082770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 50913276 - 50913324
Alignment:
Q  74 tatatatactcatcattgggtttacaagcaacacaaatcattcttacct 122  Q
    ||||||||  |||| ||| ||||||||||||||||||||||||||||||    
T  50913276 tatatataaccatccttgagtttacaagcaacacaaatcattcttacct 50913324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 21607981 - 21608332
Alignment:
Q  18 gtctccagctaaacccatcgaacacctcattcaccatacaattggtttgcacaatctatatatactcatcattgggtttacaagcaacacaaatcattct 117  Q
    ||||||| |||||||||| ||||| ||| ||||||||||||| |||||| | | ||||||||||| || ||||||||||| |||||| ||||||||||||    
T  21607981 gtctccaactaaacccattgaacagctccttcaccatacaatcggtttgtaaagtctatatatacccaccattgggtttagaagcaaaacaaatcattct 21608080  T
Q  118 tacctcaaagcatcataactcaag-----ttattttttctactacttcgttgagatcattcagtcgtgaagaaac-aaaacaagaatgggttttcgctta 211  Q
    |||||| ||||||||||| |||||     ||||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  21608081 tacctcgaagcatcataattcaagttcacttattttttctactacttctttgagatcattctgttgtgaagaaacaaaaacaagaatgggttttcgctta 21608180  T
Q  212 cctggt-------gatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctatttagcggtgtatgttggagaggaaatga 304  Q
    ||||||       |||||||||||| |||| |||| ||||| | ||||||| ||||||| |||||||||||| | || ||||||||||||||| ||||||    
T  21608181 cctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 21608280  T
Q  305 agaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
      |||||| |||||||| || ||||||||||||||||||| |||||||||||    
T  21608281 gaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaatt 21608332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 3072268 - 3072364
Alignment:
Q  189 aaacaagaatgggttttcgcttacctggt-------gatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaaggctattt 278  Q
    |||||||||||||||||||||||||||||       |||||||||||| |||| |||| ||||| |||||||||  ||||| |||||| ||||||||    
T  3072268 aaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagaggaagccccaaatggctattt 3072364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 27422097 - 27421999
Alignment:
Q  259 gaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatta 357  Q
    |||||||||||||||||| | || || |||||||||||   ||||||  ||||| ||||||||||| ||| ||||||  | || || ||||||||||||    
T  27422097 gaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaatta 27421999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 27424676 - 27424579
Alignment:
Q  259 gaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaatt 356  Q
    |||||||||||||||||| | || || |||||||||||  |||||| | ||||  ||||||||||| ||| ||||||  | ||||  |||||||||||    
T  27424676 gaagtcccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaatt 27424579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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