View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_8 (Length: 730)

Name: NF1773_low_8
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_8
NF1773_low_8
[»] chr4 (14 HSPs)
chr4 (354-722)||(42756658-42757032)
chr4 (206-273)||(42757113-42757180)
chr4 (404-648)||(11560140-11560383)
chr4 (490-648)||(13909799-13909957)
chr4 (490-648)||(24180591-24180749)
chr4 (467-618)||(35648520-35648671)
chr4 (467-648)||(12576835-12577016)
chr4 (467-632)||(24182429-24182594)
chr4 (567-618)||(22681162-22681213)
chr4 (467-641)||(28474811-28474986)
chr4 (580-638)||(2041166-2041224)
chr4 (465-634)||(13239976-13240143)
chr4 (594-640)||(50159145-50159191)
chr4 (356-425)||(39977911-39977979)
[»] scaffold1315 (2 HSPs)
scaffold1315 (354-717)||(1144-1497)
scaffold1315 (206-273)||(996-1063)
[»] scaffold1293 (2 HSPs)
scaffold1293 (354-717)||(574-927)
scaffold1293 (206-273)||(1008-1075)
[»] chr2 (13 HSPs)
chr2 (355-710)||(6466792-6467148)
chr2 (490-648)||(45661111-45661269)
chr2 (467-648)||(5788011-5788192)
chr2 (649-722)||(20442863-20442936)
chr2 (210-272)||(6466646-6466708)
chr2 (490-648)||(45662556-45662713)
chr2 (481-632)||(14872722-14872873)
chr2 (481-648)||(45053988-45054155)
chr2 (567-636)||(41752905-41752974)
chr2 (471-616)||(41753953-41754098)
chr2 (482-613)||(36720074-36720205)
chr2 (486-532)||(25546950-25546996)
chr2 (581-618)||(39403381-39403418)
[»] chr8 (22 HSPs)
chr8 (17-203)||(43439377-43439560)
chr8 (490-648)||(43215467-43215625)
chr8 (479-632)||(18431492-18431645)
chr8 (490-633)||(45528202-45528345)
chr8 (490-648)||(15275927-15276084)
chr8 (490-648)||(15456296-15456453)
chr8 (467-616)||(38291757-38291906)
chr8 (481-618)||(15276763-15276900)
chr8 (481-618)||(15457132-15457269)
chr8 (459-611)||(760653-760805)
chr8 (448-524)||(5685854-5685930)
chr8 (545-618)||(19263301-19263374)
chr8 (567-636)||(23140535-23140604)
chr8 (588-641)||(38291332-38291385)
chr8 (448-530)||(45247753-45247835)
chr8 (475-532)||(14715279-14715336)
chr8 (471-616)||(23141588-23141733)
chr8 (568-636)||(13758981-13759049)
chr8 (466-521)||(38291216-38291271)
chr8 (560-618)||(20874610-20874668)
chr8 (467-641)||(36990271-36990444)
chr8 (543-648)||(42797046-42797151)
[»] scaffold0169 (1 HSPs)
scaffold0169 (443-641)||(5082-5279)
[»] chr1 (6 HSPs)
chr1 (465-634)||(31089469-31089639)
chr1 (356-632)||(16852766-16853042)
chr1 (465-634)||(27342183-27342355)
chr1 (356-418)||(22635700-22635762)
chr1 (560-608)||(11976911-11976959)
chr1 (481-618)||(43387042-43387179)
[»] chr3 (12 HSPs)
chr3 (481-632)||(12125429-12125580)
chr3 (502-648)||(9265297-9265443)
chr3 (490-648)||(9266725-9266882)
chr3 (467-618)||(20934184-20934335)
chr3 (456-633)||(6087136-6087313)
chr3 (467-632)||(6436831-6436996)
chr3 (112-161)||(25642653-25642702)
chr3 (490-632)||(9262779-9262921)
chr3 (545-618)||(50419-50492)
chr3 (581-640)||(14240497-14240556)
chr3 (474-537)||(431968-432031)
chr3 (471-530)||(25225358-25225417)
[»] scaffold0159 (1 HSPs)
scaffold0159 (467-648)||(32384-32565)
[»] chr6 (10 HSPs)
chr6 (649-722)||(24360852-24360925)
chr6 (481-623)||(11554328-11554470)
chr6 (481-623)||(4852808-4852950)
chr6 (545-615)||(2970421-2970491)
chr6 (540-616)||(18089937-18090013)
chr6 (467-632)||(26596659-26596824)
chr6 (490-641)||(34515068-34515220)
chr6 (475-613)||(24397910-24398047)
chr6 (546-612)||(26595896-26595962)
chr6 (471-616)||(1599831-1599976)
[»] chr7 (13 HSPs)
chr7 (481-633)||(17474599-17474751)
chr7 (481-633)||(17578463-17578615)
chr7 (503-640)||(6202346-6202483)
chr7 (481-633)||(17510083-17510235)
chr7 (481-633)||(17542979-17543131)
chr7 (443-556)||(42078967-42079082)
chr7 (490-639)||(38788064-38788213)
chr7 (447-508)||(15464396-15464457)
chr7 (579-648)||(48553243-48553312)
chr7 (489-636)||(24708450-24708597)
chr7 (567-610)||(27938832-27938875)
chr7 (467-544)||(6188756-6188833)
chr7 (467-544)||(6195272-6195349)
[»] scaffold0061 (1 HSPs)
scaffold0061 (538-633)||(45583-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (538-633)||(153109-153204)
[»] scaffold0191 (1 HSPs)
scaffold0191 (543-648)||(12247-12352)
[»] scaffold0050 (1 HSPs)
scaffold0050 (543-639)||(10561-10657)
[»] scaffold1312 (1 HSPs)
scaffold1312 (492-618)||(2-128)
[»] chr5 (5 HSPs)
chr5 (443-521)||(15301534-15301611)
chr5 (580-618)||(9048715-9048753)
chr5 (467-618)||(24541767-24541918)
chr5 (467-618)||(38015875-38016026)
chr5 (510-607)||(38012839-38012936)
[»] scaffold0377 (1 HSPs)
scaffold0377 (467-556)||(12561-12652)
[»] scaffold0074 (1 HSPs)
scaffold0074 (473-613)||(30831-30970)
[»] scaffold0024 (1 HSPs)
scaffold0024 (581-641)||(46261-46321)
[»] scaffold0380 (1 HSPs)
scaffold0380 (467-641)||(15251-15425)
[»] scaffold0284 (2 HSPs)
scaffold0284 (517-615)||(7539-7637)
scaffold0284 (448-575)||(6413-6540)
[»] scaffold1743 (1 HSPs)
scaffold1743 (545-618)||(185-258)
[»] scaffold0012 (1 HSPs)
scaffold0012 (475-532)||(95951-96008)
[»] scaffold0051 (1 HSPs)
scaffold0051 (459-506)||(17307-17354)
[»] scaffold1804 (1 HSPs)
scaffold1804 (566-604)||(1034-1072)
[»] scaffold0211 (1 HSPs)
scaffold0211 (596-633)||(16017-16054)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-160; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 354 - 722
Target Start/End: Complemental strand, 42757032 - 42756658
Alignment:
Q  354 ctaaagaaagaaacaaagacaccc----ctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccat 449  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  42757032 ctaaagaaagaaacaaagacacccacctctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatcttatttttctatctcaccat 42756933  T
Q  450 atcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaaca 549  Q
    ||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  42756932 atcatagacacggagaatctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaaca 42756833  T
Q  550 tataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat- 648  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  |||||     
T  42756832 tataagttaaatgacaaatatacctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctctaagccaaatgtgatgatt 42756733  T
Q  649 -aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctatgct 722  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42756732 caagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttgct 42756658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 42757180 - 42757113
Alignment:
Q  206 aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttag 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  42757180 aaaatcataaattatcagcaactcattctattaattatattgtcaatgataaaacacactcttcttag 42757113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 404 - 648
Target Start/End: Original strand, 11560140 - 11560383
Alignment:
Q  404 ttttttaccatgttgttcctcttatattatttttccttctcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttg 503  Q
    |||||||||||||||| ||||| |  |||||||||  |||||||| ||||   |   | ||| || ||||||||||||||||||| |||||||||||  |    
T  11560140 ttttttaccatgttgtgcctctgactttatttttctatctcaccaaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatggg 11560239  T
Q  504 tgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtg 603  Q
    ||||| |||||| |||||||||||||||| |||| ||| | ||| ||||| || | ||||||||||||| |   |||||||||||||   |||||||||     
T  11560240 tgagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgagatgacaaatatacttgatgtcttaaggttttaagtgaagatgta 11560338  T
Q  604 gtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || |||||  || || | | ||||||||||| ||||||| |||||    
T  11560339 gtttcaataccaattctagaatttctcttagtcaaatgcgatgat 11560383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 648
Target Start/End: Original strand, 13909799 - 13909957
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||||| | ||| | |||||||||   |||||||| |||    
T  13909799 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattt 13909898  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  13909899 tgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatgtaatgat 13909957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 490 - 648
Target Start/End: Complemental strand, 24180749 - 24180591
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||| | ||||| | ||||||||||   |||||||||||    
T  24180749 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaatgtccaatatacctaatatcttaaggttt 24180650  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || ||||| |||| ||||||| |||| || |||| ||||||||||  ||||| ||||||    
T  24180649 tgaatgaaaatgtagtgtcaaactcatttttggggtttctcttagataaatgtaatgat 24180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 467 - 618
Target Start/End: Complemental strand, 35648671 - 35648520
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||| ||||||||||||| | |||| |||| ||||||| |||||||||||||| | |||| | |||| ||| |||||||||||||  | | ||  |    
T  35648671 tctcacacgtaagggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaaca 35648572  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||||||  | |||||| ||||   | |||||||||||||||||||||||    
T  35648571 atatacctaatgccttaagattttacgtaaagatgtggtgtcaatctcactt 35648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 467 - 648
Target Start/End: Complemental strand, 12577016 - 12576835
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    ||||||||||||  ||| |||| |||||||||||  | |||| |||||| ||| |||||||||||| |  | ||| | |||||||| ||| | |||||      
T  12577016 tctcacacttaaaagagcgatgataatgtgtcataggggagttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagatgaccc 12576917  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    |||||||||  ||||||| ||||||| | || || |||| ||||||||| || ||||  |||||||||||||||| ||||||    
T  12576916 atatacctattgtcttaaagttttgggtcaaaatatggtctcaatctcatttgtggggattctcttagccaaatgtaatgat 12576835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 467 - 632
Target Start/End: Complemental strand, 24182594 - 24182429
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||| | |||| | |||| ||| || |||||  | || | ||||| |    
T  24182594 tctcacacataatagagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgacta 24182495  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    |||||| ||  || |||||||||  | ||||||||||||||||||||||||| | |||||||||||    
T  24182494 atatacataatgtattaaggtttcaggtgaagatgtggtgtcaatctcacttgtcggatttctctt 24182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 618
Target Start/End: Complemental strand, 22681213 - 22681162
Alignment:
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||||||  |||||||||||| || || ||||||||||||||||||||||    
T  22681213 atatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcactt 22681162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 641
Target Start/End: Complemental strand, 28474986 - 28474811
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||| |||  |||| ||| | ||||||||| ||||||| |||||||||||||| | |||| | |||| ||| ||  ||||  | || | ||| | |    
T  28474986 tctcacacataatagagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagatacatgaatgtgagatggcta 28474887  T
Q  567 atatacctagagtctta-aggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    |||||| ||  |||||  ||||||||  |||||||||||||||||||||| || |||| |||||||| | ||||||    
T  28474886 atatacataatgtctttcaggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatg 28474811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 2041166 - 2041224
Alignment:
Q  580 cttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaa 638  Q
    ||||||||||||| ||||||||||||||| | ||||||| || | || |||||||||||    
T  2041166 cttaaggttttgggtgaagatgtggtgtccaactcacttgtgtggttgctcttagccaa 2041224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 634
Target Start/End: Complemental strand, 13240143 - 13239976
Alignment:
Q  465 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgac 564  Q
    ||||||||| |||||||||||||  | ||||  |||  |||||| |||||||| | |||||||||| | |||| ||| || |||| ||  |  | || |     
T  13240143 aatctcacatttaagggagagatatttatgttccat--gtgagttaaacttctccgttggatgcaatagtatatattgagtaacaaatgcgcgagataaa 13240046  T
Q  565 aaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 634  Q
    ||||||||||| ||||||||| |||| |  ||||||||| | |||||||||||| | || ||||||||||    
T  13240045 aaatatacctaaagtcttaagattttaggcgaagatgtgatctcaatctcacttgtagggtttctcttag 13239976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 50159145 - 50159191
Alignment:
Q  594 tgaagatgtggtgtcaatctcacttatgggatttctcttagccaaat 640  Q
    |||||||||||||||||||| ||||||| | |||||||||| |||||    
T  50159145 tgaagatgtggtgtcaatcttacttatgaggtttctcttagtcaaat 50159191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 39977911 - 39977979
Alignment:
Q  356 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctct 425  Q
    ||||||||||| ||| ||| |||||| |||||  ||||||||| ||| |||||||||||||||| |||||    
T  39977911 aaagaaagaaaaaaa-acatccctctttgaaactgccaccaacccaccttttttaccatgttgtgcctct 39977979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 210; Significance: 1e-114; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 354 - 717
Target Start/End: Original strand, 1144 - 1497
Alignment:
Q  354 ctaaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatca 453  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||    
T  1144 ctaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttctatcttaccatatca 1243  T
Q  454 tggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatata 553  Q
    | ||| || | |||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  1244 tagacacataaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatata 1331  T
Q  554 agttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aag 651  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  |||    
T  1332 agttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgattcaag 1431  T
Q  652 tcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcct 717  Q
    |||||| || ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  1432 tcattatagactccctcagagctctaatcattatgataaattattgtcttaatttttggttgtcct 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 996 - 1063
Alignment:
Q  206 aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttag 273  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  996 aaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactctccttag 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 210; Significance: 1e-114; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 354 - 717
Target Start/End: Complemental strand, 927 - 574
Alignment:
Q  354 ctaaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatca 453  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||    
T  927 ctaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttctatcttaccatatca 828  T
Q  454 tggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatata 553  Q
    | ||| || | |||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  827 tagacacataaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatata 740  T
Q  554 agttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aag 651  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  |||    
T  739 agttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgattcaag 640  T
Q  652 tcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcct 717  Q
    |||||| || ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  639 tcattatagactccctcagagctctaatcattatgataaattattgtcttaatttttggttgtcct 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 1075 - 1008
Alignment:
Q  206 aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttag 273  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  1075 aaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactcttcttag 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 355 - 710
Target Start/End: Original strand, 6466792 - 6467148
Alignment:
Q  355 taaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcat 454  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||| ||||||||    
T  6466792 taaagaaaggaacaaagacacccctctatgtaatagtcaccaactcacattttt-accattttgttcctcttatcttatttttccatctcaacatatcat 6466890  T
Q  455 ggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataa 554  Q
     |||  |||||||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| ||||||    
T  6466891 agacatagagaatctcgcccttaagggtgagatgataatgtgtcatttatgagtaaaacttctacattggatccaagagtatatattgagcaagatataa 6466990  T
Q  555 gttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aagt 652  Q
     | |||||||||||||| |||  |||||||| ||||||||| ||||||||||||||||||||||||  | ||||||||| ||||||   |||||  ||||    
T  6466991 atgaaatgacaaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatccaagt 6467090  T
Q  653 cattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttgg 710  Q
    ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||    
T  6467091 cattacaggatccctcggagctccaaatattatgataaattgttatcttagtttttgg 6467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 648
Target Start/End: Original strand, 45661111 - 45661269
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| |||    
T  45661111 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattt 45661210  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || ||||| |||| |||||||||||| ||||||| |||||||||| |||||| ||||||    
T  45661211 tgaatgaaaatgtagtgtcaatctcatttatggggtttctcttagacaaatgtaatgat 45661269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 648
Target Start/End: Complemental strand, 5788192 - 5788011
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| |||| |||| ||| |||||||||||||| | |||||||    
T  5788192 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 5788093  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    ||||||  | |||||||||||||||  |  ||||||| ||| ||| | || |||||  |||||||| | |||||||||||||    
T  5788092 atatactcaaagtcttaaggttttgagtttagatgtgatgtgaattttacgtatggagtttctcttggtcaaatgcaatgat 5788011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 649 - 722
Target Start/End: Original strand, 20442863 - 20442936
Alignment:
Q  649 aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctatgct 722  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||| ||||||||| ||||    
T  20442863 aagtcattacaggctcccttagagctccaatcattatgataaactgttgtcttaattttcggttgtcctttgct 20442936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 6466646 - 6466708
Alignment:
Q  210 tcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctcctta 272  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  6466646 tcataaattatctgcaactcattctattaattatattgtcacatataaaacacaccctcctta 6466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 648
Target Start/End: Original strand, 45662556 - 45662713
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||| |||||| ||||||| | ||| | ||||||| ||  |||||||| |||    
T  45662556 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacgtaatgtcttaagattt 45662655  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || ||||||||||||||||||||||| || |||| |||||||||  |||||| ||||||    
T  45662656 tgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttaaacaaatgtaatgat 45662713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 632
Target Start/End: Original strand, 14872722 - 14872873
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  14872722 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 14872821  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    ||||||  || | ||||||||||||||||||||||||| | |||||||||||    
T  14872822 ttaaggagttaggtgaagatgtggtgtcaatctcacttgtcggatttctctt 14872873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 648
Target Start/End: Complemental strand, 45054155 - 45053988
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||| | ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||||| | ||    |||||||||   |||    
T  45054155 gagagaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtc 45054056  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| |||| ||||| |||||| ||||||    
T  45054055 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttcacttagacaaatgtaatgat 45053988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 636
Target Start/End: Complemental strand, 41752974 - 41752905
Alignment:
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 636  Q
    |||||||||  ||||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||    
T  41752974 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttatgggaattctcttagcc 41752905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 616
Target Start/End: Complemental strand, 41754098 - 41753953
Alignment:
Q  471 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 570  Q
    |||||| ||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| |||||||||||||| | ||||| |||||    
T  41754098 acacttgagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatat 41753999  T
Q  571 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 616  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  41753998 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 41753953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 613
Target Start/End: Original strand, 36720074 - 36720205
Alignment:
Q  482 agagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtct 581  Q
    ||||||| ||||||||||  ||||||| ||| ||||||| ||  ||||| | ||||  || |||||||||||||| | ||||   |||||||||  ||||    
T  36720074 agagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatatacctaatgtct 36720173  T
Q  582 taaggttttggatgaagatgtggtgtcaatct 613  Q
     |||  ||||| |||||||||| |||||||||    
T  36720174 gaagactttgggtgaagatgtgatgtcaatct 36720205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 486 - 532
Target Start/End: Original strand, 25546950 - 25546996
Alignment:
Q  486 atggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 532  Q
    ||||||||||||||  ||||||| ||| |||||||||||||||||||    
T  25546950 atggtaatgtgtcaaatgtgagttaaagttctacattggatgcaaga 25546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 618
Target Start/End: Complemental strand, 39403418 - 39403381
Alignment:
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  39403418 ttaatgttttggatgaacatgtggtgtcaatctcactt 39403381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 7e-88; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 43439560 - 43439377
Alignment:
Q  17 acacaccaattacacaatgctggttttatttgcttgctttaaaaatggtgctttcttacaagggtagctcattccataggattttaccaagctcctgatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||    
T  43439560 acacaccaattacacaatgctggttttatttgcttgctttaaaaatggtgctttcttacaggggtagctcattccataggatt---ccaagctcctgatt 43439464  T
Q  117 ttgcacatggcaatagaatgggcggagaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaacttgtttgctat 203  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43439463 ttgcacatggcgatagaatgggcggagaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaacttgtttgctat 43439377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 648
Target Start/End: Complemental strand, 43215625 - 43215467
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||| |||||    
T  43215625 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttacggttt 43215526  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || ||||| |||| |||||||||||| ||||||| || ||||||| |||||| ||||||    
T  43215525 tgaatgaaaatgtagtgtcaatctcatttatggggttcctcttagacaaatgtaatgat 43215467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 479 - 632
Target Start/End: Complemental strand, 18431645 - 18431492
Alignment:
Q  479 gggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagag 578  Q
    |||||||||| ||||||||||| ||||||| |||||||||  || ||||||||| |||| ||| |||||||||||  | | ||||| ||||||||||  |    
T  18431645 gggagagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatg 18431546  T
Q  579 tcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    |||| ||||||  |||  |||||||||||| |||| |||| |||| ||||||||    
T  18431545 tcttcaggtttgagatagagatgtggtgtccatcttacttgtggggtttctctt 18431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 633
Target Start/End: Original strand, 45528202 - 45528345
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    |||||| |||| | ||||| ||| ||| || ||||||||| || |||| ||| |||||||||||| | | ||||||||||||||||  |||||||| |||    
T  45528202 taatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgacaaatatacctaatgtcttaagattt 45528301  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    ||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  45528302 tgggtgaagatttggtgtgtatctcacttgtggggtttctctta 45528345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 490 - 648
Target Start/End: Complemental strand, 15276084 - 15275927
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||  |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  15276084 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15275985  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
     | ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  15275984 cgaatgaagatgtggtgtcaatctcatttgtggg-tttctcttagacaaatgtaatgat 15275927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 490 - 648
Target Start/End: Complemental strand, 15456453 - 15456296
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||  |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  15456453 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15456354  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
     | ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  15456353 cgaatgaagatgtggtgtcaatctcatttgtggg-tttctcttagacaaatgtaatgat 15456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 616
Target Start/End: Original strand, 38291757 - 38291906
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||||||||||||| ||  | ||||| || ||| || | ||| ||| ||||| ||||||||| |  | ||| || ||||||||||| |||| |  |    
T  38291757 tctcacacttaagggagatatattgatgtggcaattgcgacttaaagttccacatttgatgcaagagtggacattgagaaacatataagtgaaattatca 38291856  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 616  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaatctcac 38291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 15276900 - 15276763
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  15276900 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15276801  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||||||| | |||||||||||||||||||||||||    
T  15276800 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 15457269 - 15457132
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  15457269 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15457170  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||||||| | |||||||||||||||||||||||||    
T  15457169 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 459 - 611
Target Start/End: Original strand, 760653 - 760805
Alignment:
Q  459 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagtta 558  Q
    ||||||| ||||||| ||||| ||||||||  |||| ||||| | ||||| |||| |||||||| ||||||||| ||||  || | |||||||| ||| |    
T  760653 gcagagagtctcacaattaagcgagagatgtgaatgcgtcatgtatgagttaaacatctacatttgatgcaagaatatactttaaacaacatatcagtga 760752  T
Q  559 aatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaat 611  Q
    | |||| ||||||||||  ||||||   ||||| ||||| |||||||||||||    
T  760753 agtgactaatatacctaatgtcttactattttgaatgaatatgtggtgtcaat 760805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 524
Target Start/End: Original strand, 5685854 - 5685930
Alignment:
Q  448 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattgg 524  Q
    ||||||| |||  |||||||||||||||||| ||||||||| ||||||||||| ||||||| | | |||||||||||    
T  5685854 atatcatagacatagagaatctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattctacattgg 5685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 618
Target Start/End: Complemental strand, 19263374 - 19263301
Alignment:
Q  545 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    ||||| |||||| | |||||  |||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  19263374 caacaaataagtgatatgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 19263301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 636
Target Start/End: Complemental strand, 23140604 - 23140535
Alignment:
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 636  Q
    |||||||||  ||||||||||||||| | || ||||||||||||| ||| |||||||| |||||||||||    
T  23140604 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatttcatttatgggaattctcttagcc 23140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 641
Target Start/End: Original strand, 38291332 - 38291385
Alignment:
Q  588 tttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||| ||||||    
T  38291332 tttggatgcagatgtggtgtcaatcttatttatgggatttctcttagtcaaatg 38291385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 530
Target Start/End: Original strand, 45247753 - 45247835
Alignment:
Q  448 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaa 530  Q
    ||||||| | |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||| ||| ||||||    
T  45247753 atatcatagccgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctacgttgaatgcaa 45247835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 14715279 - 14715336
Alignment:
Q  475 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 532  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| |||||||||    
T  14715279 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaaga 14715336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 616
Target Start/End: Complemental strand, 23141733 - 23141588
Alignment:
Q  471 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 570  Q
    |||||||||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| ||||||||| |||| | ||||| |||||    
T  23141733 acacttaagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatacaagtgagatgactaatat 23141634  T
Q  571 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 616  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  23141633 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 23141588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 636
Target Start/End: Original strand, 13758981 - 13759049
Alignment:
Q  568 tatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 636  Q
    ||||||||  ||||||||||||||| | || ||||||||||||||||| || ||||  |||||||||||    
T  13758981 tatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttgtggggattctcttagcc 13759049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 38291216 - 38291271
Alignment:
Q  466 atctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 521  Q
    ||||||||||||||||||||||| |||||||  || ||||| | ||||||||||||    
T  38291216 atctcacacttaagggagagatgttaatgtgctatgtgtgatttaaacttctacat 38291271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 20874610 - 20874668
Alignment:
Q  560 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||| ||||| |||  || ||||||||||||||||| |||||| |||||||||||||    
T  20874610 atgacatatatatctaatgttttaaggttttggatgaaaatgtggcgtcaatctcactt 20874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 641
Target Start/End: Original strand, 36990271 - 36990444
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    ||||||| |||||  |||||||  |||||||||   |||| | |||| |||||||| || |||||| || | ||| | |||||| ||||| | ||||| |    
T  36990271 tctcacatttaagctagagatgtaaatgtgtcacgcgtgaattaaacatctacattagacgcaagagtagacattaaacaacatgtaagtgagatgacca 36990370  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    |||||  ||  ||||||||||||||  |||| ||||||||||||| ||| || | || |||||||||| ||||||    
T  36990371 atatatgtaatgtcttaaggttttgagtgaatatgtggtgtcaatatcatttgttgg-tttctcttagtcaaatg 36990444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 648
Target Start/End: Complemental strand, 42797151 - 42797046
Alignment:
Q  543 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgc 642  Q
    |||||||||||||| | ||||| |||||  | |  |||||||||||||| ||  ||||||||||| ||| |||| | |||| ||| |||| | |||||||    
T  42797151 agcaacatataagtgagatgactaatatttccaatgtcttaaggttttgaatttagatgtggtgtgaatttcacgtgtggggtttttcttggtcaaatgc 42797052  T
Q  643 aatgat 648  Q
    ||||||    
T  42797051 aatgat 42797046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 443 - 641
Target Start/End: Original strand, 5082 - 5279
Alignment:
Q  443 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattc 542  Q
    |||||||||| | ||  |||||| ||||||| ||||| ||||||||  ||||||||||  |||||| |||| |||||||||||||||||| |||| |||     
T  5082 tcaccatatcttagatacagagagtctcacaattaagcgagagatgagaatgtgtcatgcgtgagttaaacatctacattggatgcaagaatatacattg 5181  T
Q  543 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    | |||||||||||| || |||| ||||||||||  ||||||   |||||| |||| ||||||||||||| ||| || | || |||||||||| ||||||    
T  5182 aacaacatataagtgaagtgaccaatatacctaatgtcttactattttgggtgaatatgtggtgtcaatatcatttgttgg-tttctcttagtcaaatg 5279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 634
Target Start/End: Complemental strand, 31089639 - 31089469
Alignment:
Q  465 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgac 564  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||| ||| |||||||||||||| |||| ||||  || |||||||||||||  | ||||     
T  31089639 aatctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgat 31089540  T
Q  565 aaatatacctagagtcttaag-gttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 634  Q
     ||||||||||  |||| |||  |||| | ||| ||||||||||||||||||||| || | ||||||||||    
T  31089539 caatatacctaatgtctgaagtttttttggtgaggatgtggtgtcaatctcacttgtgaggtttctcttag 31089469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 356 - 632
Target Start/End: Original strand, 16852766 - 16853042
Alignment:
Q  356 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcatg 455  Q
    ||||||||||||||| ||||  || ||| ||||   ||||||| ||||||||||| ||||||||  |||| || ||||||  |  |||||||||||||      
T  16852766 aaagaaagaaacaaaaacacttctatataaaatcaacaccaacccacattttttaacatgttgtgtctctgatcttatttggctctctcaccatatcaga 16852865  T
Q  456 gacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataag 555  Q
     |  | ||   |||||||  |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | |    
T  16852866 aatacggattgtctcacaagtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatg 16852965  T
Q  556 ttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    | | ||||| ||||||| ||  || ||||||||||    |||||||||||||||||||||| | | |||||||||||    
T  16852966 tgagatgactaatatacataatgtattaaggttttaagggaagatgtggtgtcaatctcacatgtcggatttctctt 16853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 634
Target Start/End: Original strand, 27342183 - 27342355
Alignment:
Q  465 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaat---tcagcaacatataagttaaat 561  Q
    ||||||||| |||||||||||||  | ||||  ||| ||||||| ||||||||||||||||||||| | |||| ||   |||| |||| ||| |  | ||    
T  27342183 aatctcacatttaagggagagatatttatgttccatgtgtgagttaaacttctacattggatgcaatagtatatattgatcagtaacaaatacgcgagat 27342282  T
Q  562 gacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 634  Q
     | ||||||||||| ||||||||| |||| |  ||||||||| | ||||| |||||| | || ||||||||||    
T  27342283 aaaaaatatacctaaagtcttaagattttaggcgaagatgtgatctcaatttcacttgtagggtttctcttag 27342355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 22635762 - 22635700
Alignment:
Q  356 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttg 418  Q
    |||||||| ||||||||||||| | ||| |||  ||||| |||||||||||||||||||||||    
T  22635762 aaagaaaggaacaaagacacccttgtataaaaccgccacaaactcacattttttaccatgttg 22635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 608
Target Start/End: Original strand, 11976911 - 11976959
Alignment:
Q  560 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtc 608  Q
    |||||| |||||| ||| |||||||||||||||||||||||||| ||||    
T  11976911 atgacacatatacatagtgtcttaaggttttggatgaagatgtgttgtc 11976959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 43387179 - 43387042
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||| ||||||||||  ||||||| ||| ||  |||||| |||||| | || |  || || ||||||||||| |||||||   |||| |||  |||    
T  43387179 gagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtc 43387080  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    ||||| |||||| ||||| |||| ||||||||| ||||    
T  43387079 ttaagattttgggtgaagttgtgatgtcaatcttactt 43387042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 481 - 632
Target Start/End: Complemental strand, 12125580 - 12125429
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||| |||||||||||| |||||| | |||||||| || ||||||||| |||| ||| ||||||||||| || | ||||| ||||||||||  |||    
T  12125580 gagagatgttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtc 12125481  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    || | ||||  |||  |||||||||||| |||| |||| |||| ||||||||    
T  12125480 ttcatgtttgagatagagatgtggtgtctatcttacttgtggggtttctctt 12125429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 502 - 648
Target Start/End: Original strand, 9265297 - 9265443
Alignment:
Q  502 tgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatg 601  Q
    ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||||||||| |||||  ||    
T  9265297 tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaaggttttgaatgaaactg 9265396  T
Q  602 tggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    | |||||||||||| |||| || |||||||||| |||||| ||||||    
T  9265397 tagtgtcaatctcatttatagggtttctcttagacaaatgtaatgat 9265443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 490 - 648
Target Start/End: Original strand, 9266725 - 9266882
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||| |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  9266725 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 9266824  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    || ||||| ||||||||||||||||| ||  ||| |||||||||| ||||| |||||||    
T  9266825 tgaatgaaaatgtggtgtcaatctcatttgcggg-tttctcttagacaaatacaatgat 9266882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 467 - 618
Target Start/End: Complemental strand, 20934335 - 20934184
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||| ||||||||||||| | |||| |||| ||||| | |||||||||||||| |||||| | |||| ||| |||||||||||||  | | ||  |    
T  20934335 tctcacacataagggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaaca 20934236  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||||||  | |||||| ||||   |||| ||||||||||||||||||||    
T  20934235 atatacctaatgccttaagattttacgtgaatatgtggtgtcaatctcactt 20934184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 633
Target Start/End: Complemental strand, 6087313 - 6087136
Alignment:
Q  456 gacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataag 555  Q
    |||||| ||| ||||||| ||||||||| |||| | ||||||||| | | ||| |||||||||||||  |||||| | |||| |   |||||||||||||    
T  6087313 gacgcaaagactctcacatttaagggagcgatgttgatgtgtcatgtttaagttaaacttctacatttcatgcaatagtatataactagcaacatataag 6087214  T
Q  556 ttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    | | || |||| ||||||||   ||| |||||||| | |||| |||| |||| ||||||| || |||| |||||||||    
T  6087213 tgagattacaagtatacctaatatctcaaggttttaggtgaaaatgtagtgttaatctcaattgtggggtttctctta 6087136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 467 - 632
Target Start/End: Original strand, 6436831 - 6436996
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||| |||  |||| ||| ||||||||||| | | ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| |    
T  6436831 tctcacacgtaacagagatatgttaatgtgtcatgtctaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgacta 6436930  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    |||||| ||  || ||||||| || | ||||||||||| ||||||||||||| | |||||||||||    
T  6436931 atatacataatgtattaaggtgttaggtgaagatgtggcgtcaatctcacttgtcggatttctctt 6436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 25642702 - 25642653
Alignment:
Q  112 tgattttgcacatggcaatagaatgggcggagaatcaatttacggagaga 161  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  25642702 tgattttacacatggcaatggaatgggcggagaatcaatttacggagaga 25642653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 632
Target Start/End: Original strand, 9262779 - 9262921
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  || |||||||||    
T  9262779 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttt 9262878  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    | | |||||||||| | |||||||||| | | |||||||||||    
T  9262879 taggtgaagatgtgctctcaatctcacatgtcggatttctctt 9262921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 618
Target Start/End: Original strand, 50419 - 50492
Alignment:
Q  545 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    ||||| |||||| | |||||  |||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  50419 caacaaataagtgatatgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcactt 50492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 640
Target Start/End: Complemental strand, 14240556 - 14240497
Alignment:
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaat 640  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| |||||||||| |||||    
T  14240556 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaat 14240497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 537
Target Start/End: Original strand, 431968 - 432031
Alignment:
Q  474 cttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactata 537  Q
    ||||| ||||||||  |||||||||| |||||||| ||| ||| ||||||||||||||| ||||    
T  431968 cttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtata 432031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 25225417 - 25225358
Alignment:
Q  471 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaa 530  Q
    ||||||||||||| |||| |||| |||||||||||||| ||| ||| |||||| ||||||    
T  25225417 acacttaagggagggatgttaatatgtcatttgtgagttaaagttccacattgaatgcaa 25225358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 648
Target Start/End: Complemental strand, 32565 - 32384
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| |||| |||| ||| |||||||||||||| | |||||||    
T  32565 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 32466  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    ||||||  | |||||||||||||||  |  ||||||| ||| ||| | || |||||  |||||||| | |||||||||||||    
T  32465 atatactcaaagtcttaaggttttgagtttagatgtgatgtgaattttacgtatggagtttctcttggtcaaatgcaatgat 32384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 649 - 722
Target Start/End: Complemental strand, 24360925 - 24360852
Alignment:
Q  649 aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctatgct 722  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||| ||||||||| ||||    
T  24360925 aagtcattacaggctcccttagagctccaatcattatgataaactgttgtcttaattttcggttgtcctttgct 24360852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 623
Target Start/End: Complemental strand, 11554470 - 11554328
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||||| || ||    || | |||||||| ||| | |||||  || ||||||  |||    
T  11554470 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtacctaatgtc 11554371  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatggg 623  Q
    |||||||||||| | || ||||||||||||||||| |||||||    
T  11554370 ttaaggttttgggtcaaaatgtggtgtcaatctcatttatggg 11554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 481 - 623
Target Start/End: Original strand, 4852808 - 4852950
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||||| || ||    || | |||||||| ||| | |||||  || |||| |  |||    
T  4852808 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtaccgaatgtc 4852907  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatggg 623  Q
    ||||| |||||||| || ||||||||||||||||| |||||||    
T  4852908 ttaagattttggatcaaaatgtggtgtcaatctcatttatggg 4852950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 615
Target Start/End: Original strand, 2970421 - 2970491
Alignment:
Q  545 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctca 615  Q
    |||||||||||| |||||||| ||||||||   |||||||  |||||||| ||||||||||||||||||||    
T  2970421 caacatataagtgaaatgacacatatacctcatgtcttaaaattttggataaagatgtggtgtcaatctca 2970491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 616
Target Start/End: Complemental strand, 18090013 - 18089937
Alignment:
Q  540 ttcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 616  Q
    ||||| ||||||||| | | ||||  ||||||||||  | ||||||||||||| |||||||||||||||||||||||    
T  18090013 ttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctcac 18089937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 632
Target Start/End: Complemental strand, 26596824 - 26596659
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    ||||||| || ||||||||||| | |||| |||| ||||| | ||||||||||||||| ||||| |  ||| ||| || ||||  ||||  | |||| ||    
T  26596824 tctcacatttcagggagagatgtttatgtatcatgtgtgacttaaacttctacattggctgcaatagaatatattgagtaacaattaagcgagatgaaaa 26596725  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 632  Q
    |||||||||  ||||||||  ||| |  ||||||||| | ||||| |||||| | |||||||||||    
T  26596724 atatacctaatgtcttaagagtttaggcgaagatgtgatctcaatttcacttgtaggatttctctt 26596659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 641
Target Start/End: Complemental strand, 34515220 - 34515068
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtctta-aggtt 588  Q
    ||||||||||| ||| ||| |||||||||||||| | |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  |||||  |||||    
T  34515220 taatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttcaggtt 34515121  T
Q  589 ttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    |||  |||||||||| ||||||||||| || |||| |||||||| | ||||||    
T  34515120 ttgagtgaagatgtgatgtcaatctcatttttggggtttctcttggtcaaatg 34515068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 613
Target Start/End: Original strand, 24397910 - 24398047
Alignment:
Q  475 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacct 574  Q
    ||||| |||||||  ||||||||||| ||||||| || |||||||||| || | |  | |||| ||| |||||||||||| | | ||||| |||||| ||    
T  24397910 ttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatgactaatatatct 24398008  T
Q  575 agagtcttaaggttttggatgaagatgtggtgtcaatct 613  Q
    |  ||| |||| |||||| |||||| ||| |||||||||    
T  24398009 aatgtcgtaagattttgggtgaagaggtgatgtcaatct 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 612
Target Start/End: Complemental strand, 26595962 - 26595896
Alignment:
Q  546 aacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatc 612  Q
    ||||||||||| | ||||| |||  |||||  ||||||||||||||||||| |||||| ||||||||    
T  26595962 aacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaatc 26595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 616
Target Start/End: Original strand, 1599831 - 1599976
Alignment:
Q  471 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 570  Q
    |||||| ||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| |||||||||||| | | ||||| |||||    
T  1599831 acacttgagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatgactaatat 1599930  T
Q  571 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 616  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  1599931 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 1599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 633
Target Start/End: Complemental strand, 17474751 - 17474599
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| ||||||||||||   ||    
T  17474751 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatc 17474652  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17474651 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17474599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 633
Target Start/End: Original strand, 17578463 - 17578615
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| ||||||||||||   ||    
T  17578463 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatc 17578562  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17578563 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17578615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 640
Target Start/End: Original strand, 6202346 - 6202483
Alignment:
Q  503 gtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgt 602  Q
    |||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| ||||| ||||| |||     
T  6202346 gtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattttgaatgaaaatgc 6202445  T
Q  603 ggtgtcaatctcacttatgggatttctcttagccaaat 640  Q
     |||||||||||| |||| || |||||||||| |||||    
T  6202446 agtgtcaatctcatttatagggtttctcttagacaaat 6202483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 481 - 633
Target Start/End: Complemental strand, 17510235 - 17510083
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| | ||||||||||   ||    
T  17510235 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatc 17510136  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17510135 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17510083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 481 - 633
Target Start/End: Original strand, 17542979 - 17543131
Alignment:
Q  481 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 580  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| | ||||||||||   ||    
T  17542979 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatc 17543078  T
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17543079 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17543131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 443 - 556
Target Start/End: Complemental strand, 42079082 - 42078967
Alignment:
Q  443 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcaagactataaat 540  Q
    |||||||||||| ||  || | ||||||||| |||||| ||||||| ||||||||||| ||||||| |||||||  |||||| ||||||||| || | ||    
T  42079082 tcaccatatcatagattcaaacaatctcacagttaaggaagagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatat 42078983  T
Q  541 tcagcaacatataagt 556  Q
    | |||||||| |||||    
T  42078982 tgagcaacatgtaagt 42078967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 639
Target Start/End: Complemental strand, 38788213 - 38788064
Alignment:
Q  490 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 589  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||| | | ||| | |||||||||   |||||||  |||    
T  38788213 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtcttaaaattt 38788114  T
Q  590 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaa 639  Q
    || ||||||||||||||||||||||| || |||  |||||||||| ||||    
T  38788113 tgaatgaagatgtggtgtcaatctcatttgtggagtttctcttagacaaa 38788064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 15464457 - 15464396
Alignment:
Q  447 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagt 508  Q
    |||||||| |||  ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  15464457 catatcatagacatagagagtctcacacttaaggtagagatgctaatgtgtcatgtgtgagt 15464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 648
Target Start/End: Complemental strand, 48553312 - 48553243
Alignment:
Q  579 tcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 648  Q
    |||||||||||| ||||||||| || ||  |||||||||| ||||||||||| || |||||||| |||||    
T  48553312 tcttaaggtttttgatgaagatatgttgataatctcacttgtgggatttctcgtaaccaaatgcgatgat 48553243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 636
Target Start/End: Original strand, 24708450 - 24708597
Alignment:
Q  489 gtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggtt 588  Q
    ||||||||||| || ||||| ||| || ||||||| ||| |||| ||||  || |||||||||||||| |||| || ||||||||||     |||||  |    
T  24708450 gtaatgtgtcaattatgagttaaaattatacattgtatgtaagagtatatgttgagcaacatataagtaaaataaccaatatacctaatactttaagact 24708549  T
Q  589 ttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 636  Q
    || |||||||||||| | | || ||||||| || | ||||||||||||    
T  24708550 tttgatgaagatgtgatttgaaactcacttgtgtggtttctcttagcc 24708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 27938832 - 27938875
Alignment:
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaa 610  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  27938832 atatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 6188756 - 6188833
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcag 544  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||||||    
T  6188756 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattcag 6188833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 6195272 - 6195349
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcag 544  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||||||    
T  6195272 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattcag 6195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 538 - 633
Target Start/End: Complemental strand, 45678 - 45583
Alignment:
Q  538 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  45678 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctctta 45583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 538 - 633
Target Start/End: Original strand, 153109 - 153204
Alignment:
Q  538 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  153109 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctctta 153204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 648
Target Start/End: Original strand, 12247 - 12352
Alignment:
Q  543 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgc 642  Q
    |||||||||||||| | ||| | |||||||||   |||||||| ||||| |||||||||||||| |||||||| |  |||| |||||||||| ||||||     
T  12247 agcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaagatgtggtggcaatctcattcgtggggtttctcttagacaaatgt 12346  T
Q  643 aatgat 648  Q
    ||||||    
T  12347 aatgat 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 543 - 639
Target Start/End: Complemental strand, 10657 - 10561
Alignment:
Q  543 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaa 639  Q
    |||||||||||||| | ||||| || ||||| |  ||| |||| |||||||||||||||| ||||||||||||||| | || |||||||||| ||||    
T  10657 agcaacatataagtgagatgacgaacataccaaatgtcctaagtttttggatgaagatgtagtgtcaatctcacttgtagggtttctcttagacaaa 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 618
Target Start/End: Original strand, 2 - 128
Alignment:
Q  492 atgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttg 591  Q
    |||| |||| ||||||| |||||||||||||| |||||| | |||| ||| |||||||||||||  | | ||  ||||||||||  | |||||| ||||     
T  2 atgtttcatgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagatttta 101  T
Q  592 gatgaagatgtggtgtcaatctcactt 618  Q
      | |||||||||||||||||||||||    
T  102 cgtaaagatgtggtgtcaatctcactt 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 521
Target Start/End: Original strand, 15301534 - 15301611
Alignment:
Q  443 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 521  Q
    |||||||||||| ||  || ||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  15301534 tcaccatatcatagatacaaagaatctca-acttaagggagagatgttaacgtgtcatatgtgagttaaacttctacat 15301611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 618
Target Start/End: Original strand, 9048715 - 9048753
Alignment:
Q  580 cttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  9048715 cttaagattttggatgaagatgtggtgtcaatctcactt 9048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 618
Target Start/End: Original strand, 24541767 - 24541918
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||| |||||||| || ||||| | || |||||| ||||||| |||||| ||  |||||||||||| | || | | || || ||||| || | || || |    
T  24541767 tctcccacttaagagaaagatgttgatatgtcatgtgtgagttaaacttttatgttggatgcaagagtgtatactgagaaaaatatacgtgagataacca 24541866  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    |||||||||  || |||||||||||||||||||| || ||| ||| ||||||    
T  24541867 atatacctactgtgttaaggttttggatgaagatatgatgttaatatcactt 24541918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 618
Target Start/End: Complemental strand, 38016026 - 38015875
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    ||||| |||| | ||||||||| ||||||||||  ||||||| ||| |   |||||| |||||| | || |  || |||||||||||||| | |||||      
T  38016026 tctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactc 38015927  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    ||||| |||  | |||||| |||||| ||||| |||| ||||||||||||||    
T  38015926 atatatctaatgacttaagattttgggtgaagttgtgatgtcaatctcactt 38015875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 607
Target Start/End: Complemental strand, 38012936 - 38012839
Alignment:
Q  510 aaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgt 607  Q
    |||||||||||||| ||| |||| || | ||| |||||||||||| | ||||||| |||||||| |  || ||| ||||||| ||  |||||||||||    
T  38012936 aaacttctacattgtatgtaagagtagatattgagcaacatataactgaaatgactaatatacccaatgttttatggttttgaatttagatgtggtgt 38012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 556
Target Start/End: Complemental strand, 12652 - 12561
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcaagactataaattcagcaacatataagt 556  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||| |||  |||||| ||||||||| || | ||| |||||||| |||||    
T  12652 tctcacacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagt 12561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 613
Target Start/End: Original strand, 30831 - 30970
Alignment:
Q  473 acttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatac 572  Q
    ||||||| |||||||  ||||||||||| ||||||| || |||||||||| | ||| | | |||| ||| |||||||||||| | | ||||| ||||||     
T  30831 acttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattaggtgcgatagtatatattgagcaacatataaatgagatgactaatatat 30929  T
Q  573 ctagagtcttaaggttttggatgaagatgtggtgtcaatct 613  Q
    |||  ||| |||| |||||| |||||| ||| |||||||||    
T  30930 ctaatgtcataagattttgggtgaagaggtgatgtcaatct 30970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 641
Target Start/End: Complemental strand, 46321 - 46261
Alignment:
Q  581 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    |||||||||| ||||| || ||||||||||| |||||||||| ||||||||||| ||||||    
T  46321 ttaaggttttagatgatgaggtggtgtcaatatcacttatggcatttctcttagtcaaatg 46261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 641
Target Start/End: Original strand, 15251 - 15425
Alignment:
Q  467 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 566  Q
    |||||||||| ||||||| | | ||||||||||  ||||| | |||||| ||||||  ||| | || || | ||| |||||||||||||| |  |||  |    
T  15251 tctcacacttgagggagaaacgttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtgagctgatta 15350  T
Q  567 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 641  Q
    |||||| ||  ||||||| ||||||| |  ||||||||||| ||| |||| | |||| |||||||||| ||||||    
T  15351 atatacttaatgtcttaaagttttgggtttagatgtggtgtgaatttcacatgtggggtttctcttagtcaaatg 15425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 615
Target Start/End: Complemental strand, 7637 - 7539
Alignment:
Q  517 tacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctca 615  Q
    ||||||||||| |||| || |  || |||||||||||||||| ||||| || |||||||  ||||||||||||    ||||| ||||||||||||||||    
T  7637 tacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaaggtttcatgtgaagttgtggtgtcaatctca 7539  T

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Target: scaffold0284; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 575
Target Start/End: Complemental strand, 6540 - 6413
Alignment:
Q  448 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaa 547  Q
    |||||| || |||| ||| ||||||| ||||||||||| || |||||| |||  ||||||| ||| ||| | ||||||||||| | || |  || | |||    
T  6540 atatcagggtcgcaaagattctcacaattaagggagaggtgttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaa 6441  T
Q  548 catataagttaaatgacaaatataccta 575  Q
    ||||||||| | ||||| ||||||||||    
T  6440 catataagtgagatgaccaatataccta 6413  T

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Target: scaffold1743 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 618
Target Start/End: Complemental strand, 258 - 185
Alignment:
Q  545 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 618  Q
    ||||| |||||| | |||||  ||||| |||  |||||||||||| ||||| ||||||||||||||||||||||    
T  258 caacaaataagtgatatgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 185  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 96008 - 95951
Alignment:
Q  475 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 532  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| |||||||||    
T  96008 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaaga 95951  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 17307 - 17354
Alignment:
Q  459 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 506  Q
    ||||||||||||||||||||| | |||||| ||||||||||| |||||    
T  17307 gcagagaatctcacacttaagagtgagatgttaatgtgtcatatgtga 17354  T

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Target: scaffold1804 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 604
Target Start/End: Original strand, 1034 - 1072
Alignment:
Q  566 aatatacctagagtcttaaggttttggatgaagatgtgg 604  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  1034 aatatacctattgtcttaaggttttggatgaagatgtgg 1072  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 16054 - 16017
Alignment:
Q  596 aagatgtggtgtcaatctcacttatgggatttctctta 633  Q
    ||||||||||||||||||||||| || |||||||||||    
T  16054 aagatgtggtgtcaatctcacttgtgtgatttctctta 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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