View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_80 (Length: 365)
Name: NF1773_low_80
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 32599099 - 32598766
Alignment:
| Q |
14 |
cacccaacaaggcaatgttcctaccaagtcaataatataatgatgaatagtacataatcatatgcatatacacatataatcaaaaccttaattgaggact |
113 |
Q |
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| T |
32599099 |
cacccaacaaggcaatgttcctaccaagtcaataat-----gatgaatagtacataatcatatgcatatacacatataatcaaaaccttaattgaggact |
32599005 |
T |
|
| Q |
114 |
tgttttattgtttagccatattgattaagtataat--atatcatgcatgctttatgataaagcttctctcaagtttaattgcactttttcacgtgagata |
211 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32599004 |
tgttttattgtttagccatattgattaagtataatatatatgatgcatgctttatgataaagcttctctcaagtttaattgcactttttcacgtgagata |
32598905 |
T |
|
| Q |
212 |
ttcgtacatgaatcattattatatacttgtgtttacaaacaaccaatcaaaaatctctttagattaaaataatactagtaattatgcaaaatgaaaacaa |
311 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32598904 |
ttcgtacatgaatc---attatatacttgtgtttacgaacaaccaatcaaaaatctctttagattaaaataatactagtaattatgcaaaatgaaaacaa |
32598808 |
T |
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| Q |
312 |
tctag---tactacagtataaaatgattataatgataattgt |
350 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
32598807 |
tctagtactactacagtataaaatgattataatgataattgt |
32598766 |
T |
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