View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_86 (Length: 353)
Name: NF1773_low_86
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 37469942 - 37469608
Alignment:
| Q |
1 |
ataccgtaaacaaatttaagatgataagttggtagaatacgcatagttttgtgaagaaaaatatataattatacaagtgataaagaacactcactgaagc |
100 |
Q |
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| T |
37469942 |
ataccgtaaacaaatttaagatgataagttggtagaataagcatagttttgtgaagaaaaatatataattatacaagtgataaagaacactcactgaagc |
37469843 |
T |
|
| Q |
101 |
gaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctccaatagtctattgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469842 |
gaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctccaatagtctattgca |
37469743 |
T |
|
| Q |
201 |
atggcaggagcaggaacattttcaattgcaccactatcaatgtccttcaaatactcagtgtaagaatgtatagcttcttcttcaaggtacccaacaactc |
300 |
Q |
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| T |
37469742 |
atggcaggagcaggaacattttcaattgcaccactatcaatgtccttcaaatactcagtgtaagaatgtatagcttcttcttcaaggtacccaacaactc |
37469643 |
T |
|
| Q |
301 |
tatgagccacctttggggaaagtatgtaaagtaca |
335 |
Q |
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| T |
37469642 |
tatgagccacctttggggaaagtatgtaaagtaca |
37469608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 29931550 - 29931688
Alignment:
| Q |
87 |
acactcactgaagcgaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctcc |
186 |
Q |
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| T |
29931550 |
acactcaccgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctcc |
29931649 |
T |
|
| Q |
187 |
aatagtctattgcaatggcaggagcaggaacattttcaa |
225 |
Q |
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|||| || |||||||| ||||||||||| |||||||||| |
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| T |
29931650 |
aataatcaattgcaatagcaggagcaggtacattttcaa |
29931688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 29934298 - 29934412
Alignment:
| Q |
111 |
acatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctccaatagtctattgcaatggcaggag |
210 |
Q |
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||||||| ||| |||||||| ||||||||||| || || | |||||| || | | ||||| || ||||| |||||||| || || ||||| ||||||| |
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| T |
29934298 |
acatccctatgatgagcctcatcagcacgaataacagtgacaacatccttaagagttgcatcatttggaagtctccaataatcaatagcaatagcaggag |
29934397 |
T |
|
| Q |
211 |
caggaacattttcaa |
225 |
Q |
| |
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|||| |||||||||| |
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| T |
29934398 |
caggtacattttcaa |
29934412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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