View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_89 (Length: 348)
Name: NF1773_low_89
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_89 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 26049582 - 26049915
Alignment:
| Q |
12 |
gagcacagagtaattatgattattgtaagttttagtagagaacaacacctataggctatagtactgttggtaagttttgcccttctgtgaaaacttgttg |
111 |
Q |
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| T |
26049582 |
gagcacagagtaattatgattattgtaagttttagtagagaacaacacctataggctatagtactgttggcaagttttgccctactgtgaaaactggttg |
26049681 |
T |
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| Q |
112 |
tcaagtaatgnnnnnnncttgatacccttgttttgtctcattttttatt--ctcctaatgaaaggaggataataagattaatatagaaaaagagagttgg |
209 |
Q |
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| T |
26049682 |
tcaagtaatgtttttttcttgatacccttgttttgtctcatttttttttttctcctaatgaaagga---taataagattaatatagaaaaagagaattgg |
26049778 |
T |
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| Q |
210 |
tgaagtgtggtgttttgaatggacacggatggaggattggactgaaaaggggactgtttatttgggtccctttgggataggatgaattgatgaggttgag |
309 |
Q |
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| T |
26049779 |
tgaagtgtggtgttttgaatggac--ggatggaggattggactgaaaaagggactgtttatttgggtccctttgggataggatgaattgatgaggttgag |
26049876 |
T |
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| Q |
310 |
ctcgttacttgcagctatcaaaggcaggtacgacgagtt |
348 |
Q |
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| T |
26049877 |
ctcgttacttgcagctatcaaaggcaggtacgacgagtt |
26049915 |
T |
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