View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_low_9 (Length: 704)
Name: NF1773_low_9
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 32)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 68 - 698
Target Start/End: Complemental strand, 37429908 - 37429269
Alignment:
| Q |
68 |
gtccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtc |
167 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37429908 |
gtccactcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttgtc |
37429809 |
T |
|
| Q |
168 |
gctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429808 |
gctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaatcactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaa |
37429709 |
T |
|
| Q |
268 |
tcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacact |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429708 |
tcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacacc |
37429609 |
T |
|
| Q |
368 |
gccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37429608 |
gccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatgctgttcttcctctatctt |
37429509 |
T |
|
| Q |
468 |
tgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccacca-----ttattttcaaacctcacacacctcact |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37429508 |
tgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattattttcaaacctcacacacctcact |
37429409 |
T |
|
| Q |
563 |
acctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttccttt----aataac |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
37429408 |
acctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagtattttcctttaataaataac |
37429309 |
T |
|
| Q |
659 |
ctaataggccaagttccatcatcattgtttcatctcactc |
698 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37429308 |
ctaacaggccaagttccatcatcattgtttcatctaactc |
37429269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 71 - 560
Target Start/End: Original strand, 37399812 - 37400297
Alignment:
| Q |
71 |
cattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgct |
170 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | || ||||| |||||||||| |||||||| | |
|
|
| T |
37399812 |
cattgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttgtcaat |
37399911 |
T |
|
| Q |
171 |
gctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatct |
270 |
Q |
| |
|
||||| |||||| || ||||||||||| ||||| ||||||| |||| ||||||| |||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
37399912 |
gctaaagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaag----tgacatcctctctttacctaatct |
37400007 |
T |
|
| Q |
271 |
tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgcc |
370 |
Q |
| |
|
|||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | | |||| |
|
|
| T |
37400008 |
tcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgct |
37400107 |
T |
|
| Q |
371 |
ttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgt |
470 |
Q |
| |
|
|| || | |||||||||||||||||||||| | |||||||||||||| | |||| ||||| || ||||| |||| | ||||||||||||||| |
|
|
| T |
37400108 |
ttttcaggtgaaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgt |
37400207 |
T |
|
| Q |
471 |
ggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|||||||||| ||||||||| | || ||||| || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37400208 |
ggaacctcacccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37400297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 79 - 560
Target Start/End: Complemental strand, 37641024 - 37640547
Alignment:
| Q |
79 |
tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || | ||||| |||||||| |||||| || |
|
|
| T |
37641024 |
tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaaga |
37640925 |
T |
|
| Q |
179 |
atttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaac |
278 |
Q |
| |
|
|||| || ||||||||||| ||||| |||| || |||| ||||||| |||||| || |||||||||||||||||||| ||||||||| | |
|
|
| T |
37640924 |
atttgtcatcctctttggtttctcttagtctacgaaaaactgagttgcaaggaaatttgtca----agtgacatcctctctttacctaatcttcaaagat |
37640829 |
T |
|
| Q |
279 |
tagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcgga |
378 |
Q |
| |
|
| |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| | |||| ||||| | |
|
|
| T |
37640828 |
tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcagg |
37640729 |
T |
|
| Q |
379 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
478 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37640728 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctc |
37640629 |
T |
|
| Q |
479 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|| ||||||||| | || ||||| || ||| || ||| ||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37640628 |
acccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaacctcaaacacctca |
37640547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 79 - 560
Target Start/End: Complemental strand, 37534252 - 37533775
Alignment:
| Q |
79 |
tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| | || ||||| ||||||||||| |||||||| |||||| || |
|
|
| T |
37534252 |
tggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaaga |
37534153 |
T |
|
| Q |
179 |
atttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaac |
278 |
Q |
| |
|
|||| || ||||||||||| ||||| ||||||| |||| ||||||| |||||| |||| |||||||||||||||||| ||||||||| | |
|
|
| T |
37534152 |
atttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaag----tgacatcctctctttacctaatcttcaaagat |
37534057 |
T |
|
| Q |
279 |
tagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcgga |
378 |
Q |
| |
|
| |||||||| | |||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | | |||| || || | |
|
|
| T |
37534056 |
tggatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcagg |
37533957 |
T |
|
| Q |
379 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
478 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| ||| ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37533956 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctc |
37533857 |
T |
|
| Q |
479 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|| ||||||||| | || || || || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37533856 |
acccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37533775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 69 - 560
Target Start/End: Complemental strand, 37712786 - 37712299
Alignment:
| Q |
69 |
tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg |
168 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| | || ||||| ||||||||||| |||||||| |
|
|
| T |
37712786 |
tccattgacatggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtca |
37712687 |
T |
|
| Q |
169 |
ctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaat |
268 |
Q |
| |
|
|||||| |||||| || ||||||||||| ||||| |||| | ||||| ||||||| |||| | |||| |||||||||||||||||| ||| |
|
|
| T |
37712686 |
atgctaaagaatttgtcatcctctttggtttctcttagtctacgagacactgtgttgcaaggaaatatatcaag----tgacatcctctctttacctaat |
37712591 |
T |
|
| Q |
269 |
cttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactg |
368 |
Q |
| |
|
|||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| | | ||| |
|
|
| T |
37712590 |
cttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctg |
37712491 |
T |
|
| Q |
369 |
ccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatcttt |
468 |
Q |
| |
|
| || || | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||| |
|
|
| T |
37712490 |
ctttttcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatcttt |
37712391 |
T |
|
| Q |
469 |
gtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|||||| ||||| ||||||||| | || ||||| || || || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37712390 |
gtggaatctcacccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37712299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 79 - 560
Target Start/End: Complemental strand, 37697939 - 37697462
Alignment:
| Q |
79 |
tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||| | || ||||||||| ||||||| || ||||| |||||| || |
|
|
| T |
37697939 |
tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga |
37697840 |
T |
|
| Q |
179 |
atttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaac |
278 |
Q |
| |
|
|||| || ||||||||||| ||||| |||| || ||||| ||||||| |||| | |||| |||||||||||||||||| ||||||||| | |
|
|
| T |
37697839 |
atttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaag----tgacatcctctctttacctaatcttcaaagat |
37697744 |
T |
|
| Q |
279 |
tagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcgga |
378 |
Q |
| |
|
| |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| | |
|
|
| T |
37697743 |
tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcagg |
37697644 |
T |
|
| Q |
379 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
478 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| | |||| ||||| || ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37697643 |
tgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattttgatgggatggttcctctatctttgtggaacctc |
37697544 |
T |
|
| Q |
479 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|||||||||||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37697543 |
actcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37697462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 79 - 560
Target Start/End: Complemental strand, 37825047 - 37824570
Alignment:
| Q |
79 |
tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||| | || ||||||||| ||||||| || ||||| |||||| || |
|
|
| T |
37825047 |
tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga |
37824948 |
T |
|
| Q |
179 |
atttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaac |
278 |
Q |
| |
|
|||| || ||||||||||| ||||| |||| || ||||| ||||||| |||| | |||| |||||||||||||||||| ||||||||| | |
|
|
| T |
37824947 |
atttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaag----tgacatcctctctttacctaatcttcaaagat |
37824852 |
T |
|
| Q |
279 |
tagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcgga |
378 |
Q |
| |
|
| |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| | | |||| || || | |
|
|
| T |
37824851 |
tggatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcagg |
37824752 |
T |
|
| Q |
379 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
478 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
37824751 |
tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattttgatgggattgttcctctatctttgtggaacctc |
37824652 |
T |
|
| Q |
479 |
actcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|| ||||||||| | || ||||| || || || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37824651 |
acccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37824570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 76 - 560
Target Start/End: Complemental strand, 37703823 - 37703343
Alignment:
| Q |
76 |
acatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaa |
175 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || | ||||| || ||||| |||||| |
|
|
| T |
37703823 |
acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctcattgtcaatgctaa |
37703724 |
T |
|
| Q |
176 |
ggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaag |
275 |
Q |
| |
|
|||||| || ||||||||||| ||||| ||||||| |||| ||||||| |||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
37703723 |
agaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaag----tgacatcctctctttacctaatcttcaaa |
37703628 |
T |
|
| Q |
276 |
aactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctc |
375 |
Q |
| |
|
| | |||||||| || ||| | |||||||||| |||||||| |||||||||||| |||| ||||| |||||| ||||||| | | |||| || || |
|
|
| T |
37703627 |
gattggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttc |
37703528 |
T |
|
| Q |
376 |
ggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaac |
475 |
Q |
| |
|
| ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||||||| |
|
|
| T |
37703527 |
aggtgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaat |
37703428 |
T |
|
| Q |
476 |
ctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
||||| ||||||||| | || ||||| || ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
37703427 |
ctcacccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
37703343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 69 - 560
Target Start/End: Complemental strand, 37436869 - 37436382
Alignment:
| Q |
69 |
tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg |
168 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| | || |||||||| ||||||| ||||||||| |
|
|
| T |
37436869 |
tccattcgcatggaagaaactcattcataatgctactaatttaagggagcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttgtcg |
37436770 |
T |
|
| Q |
169 |
ctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaat |
268 |
Q |
| |
|
|| ||| |||||| || || |||||||| ||||| |||| || ||||| ||||||| |||||| || |||||||||||||||||||| ||| |
|
|
| T |
37436769 |
ttgttaacgaatttgtcatcttctttggtttctcttagtctagcatccactcagttgcaaggaaatttgtca----agtgacatcctctctttacctaat |
37436674 |
T |
|
| Q |
269 |
cttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactg |
368 |
Q |
| |
|
|||||| | | |||||||| |||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| | ||| |
|
|
| T |
37436673 |
cttcaaagattggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctg |
37436574 |
T |
|
| Q |
369 |
ccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatcttt |
468 |
Q |
| |
|
| ||||| | ||||||||| ||||||||||| | ||||||| |||||| || |||| ||||| | || ||||| |||| | ||||||||||||| |
|
|
| T |
37436573 |
ctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatcttt |
37436474 |
T |
|
| Q |
469 |
gtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| || | || || ||| |||||||| |||||||| ||||||||| | ||||||||| |
|
|
| T |
37436473 |
gtggaacctcactcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaacccctcacacctca |
37436382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 79 - 490
Target Start/End: Complemental strand, 37595476 - 37595069
Alignment:
| Q |
79 |
tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || | ||||| |||||||| |||||| || |
|
|
| T |
37595476 |
tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaaga |
37595377 |
T |
|
| Q |
179 |
atttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttcaagaac |
278 |
Q |
| |
|
|||| || ||||||||||| ||||| |||| || |||||| ||||||| |||||| || |||||||||||||||||||| ||||||||| | |
|
|
| T |
37595376 |
atttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtca----agtgacatcctctctttacctaatcttcaaagat |
37595281 |
T |
|
| Q |
279 |
tagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcgga |
378 |
Q |
| |
|
| |||||||| |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| ||||| | |||| || || | |
|
|
| T |
37595280 |
tggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcagg |
37595181 |
T |
|
| Q |
379 |
tgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtggaacctc |
478 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| | |||| ||||| || |||| |||| | ||||||||||||||||||||||| |
|
|
| T |
37595180 |
tgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgccatttagatgggatggttcctctatctttgtggaacctc |
37595081 |
T |
|
| Q |
479 |
actcaactaaca |
490 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
37595080 |
acccaactaaca |
37595069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 71 - 490
Target Start/End: Original strand, 37391961 - 37392373
Alignment:
| Q |
71 |
cattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgct |
170 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||| || |||||||| |||||||| | |
|
|
| T |
37391961 |
cattgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttgtctat |
37392060 |
T |
|
| Q |
171 |
gctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatct |
270 |
Q |
| |
|
||||| |||| | || ||||||||||| ||||| ||| | | ||| ||||||| |||||| || |||| ||||||||||||||| ||||| |
|
|
| T |
37392061 |
gctaaagaatgtgtcatcctctttggtttctcttaggctaggagaaattgggttgcaaggaaatttgtca----agtgccatcctctctttacctaatct |
37392156 |
T |
|
| Q |
271 |
tcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgcc |
370 |
Q |
| |
|
|||| |||||||||||| ||| | || ||||| || ||||||||| || |||||||||||||| ||||||||||||||||| || || | |
|
|
| T |
37392157 |
tcaaagactagatttgtc---aaataatgaacttagcggtaaacttccaaaatcaaactggagcactcctctaaggtacttggacctatctggcatcact |
37392253 |
T |
|
| Q |
371 |
ttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgt |
470 |
Q |
| |
|
||||| | |||||||||| | || |||||| |||||||||||||||| || |||| ||||||| | || ||||| |||| | ||||||||||||||| |
|
|
| T |
37392254 |
ttctcaggtgaaattcccaaatctataggccatttgaagtatcttactcaattagtcctttcatattgcaatttagatgggatggttcctctatctttgt |
37392353 |
T |
|
| Q |
471 |
ggaacctcactcaactaaca |
490 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37392354 |
ggaacctcactcaactaaca |
37392373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 37412316 - 37412447
Alignment:
| Q |
73 |
ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgc |
172 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||| |||||||| ||||||||| |||||| ||| ||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
37412316 |
ttcacatggaaggaactcattcataatgttacaaatttaagcgagcttcatctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgc |
37412415 |
T |
|
| Q |
173 |
taaggaatttatcgtcctctttggtcgctctt |
204 |
Q |
| |
|
||| |||||| || |||||| ||||| ||||| |
|
|
| T |
37412416 |
taaagaatttgtcatcctctctggtctctctt |
37412447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37430195 - 37430130
Alignment:
| Q |
1 |
tgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
37430195 |
tgtgattggtctggaccttagttgcaacaatctgaacggtgaattagcggccaatagcaccatctt |
37430130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 410
Target Start/End: Original strand, 37381333 - 37381670
Alignment:
| Q |
69 |
tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg |
168 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||| | || || || || |||| ||| ||||| || |
|
|
| T |
37381333 |
tccattgacatggaagaaactcattcataatgctactaatttaagggagctttctttaggttgtgtgaacatgtcctctattagagcgagctctttatct |
37381432 |
T |
|
| Q |
169 |
ctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaat |
268 |
Q |
| |
|
|||||| |||||| || ||||||||||| |||||| |||| | ||||| ||||||| |||||| || |||||||||||||||||||| ||| |
|
|
| T |
37381433 |
atgctaaagaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaaatttgtca----agtgacatcctctctttacctaat |
37381528 |
T |
|
| Q |
269 |
cttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactg |
368 |
Q |
| |
|
|| ||| ||||||||| || | |||| | | || || | ||||||| ||||||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
37381529 |
ctccaaacactagatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcactcctttgaggtacttggacctctctcgcaccc |
37381628 |
T |
|
| Q |
369 |
ccttctcggatgaaattccctattccataggcaatttgaagt |
410 |
Q |
| |
|
| ||||| | ||||||||| |||||||||||| | ||||||| |
|
|
| T |
37381629 |
ctttctcaggtgaaattccttattccataggccagttgaagt |
37381670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 37412512 - 37412600
Alignment:
| Q |
311 |
aaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgccttctcggatgaaattccctattccatagg |
399 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||||| | ||| ||||| | ||||||||| ||||||||||| |
|
|
| T |
37412512 |
aaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg |
37412600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37437138 - 37437074
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37437138 |
gtgattggtctggacctcagttgcaacaatctgaaaggtgaattacatcccaatagcaccatctt |
37437074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 693
Target Start/End: Complemental strand, 37594932 - 37594866
Alignment:
| Q |
627 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37594932 |
aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatct |
37594866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37412031 - 37412076
Alignment:
| Q |
1 |
tgtgattggtttggaccttagttgcaacaatctgaacggtgaatta |
46 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
37412031 |
tgtgattggtttggaccttaggtgcaacaatcttaaaggtgaatta |
37412076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37534543 - 37534479
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
37534543 |
gtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt |
37534479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37595767 - 37595703
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
37595767 |
gtgattggtctggacctcagttgcaacaatcttaaaggtgaattacatcccaatagcaccatctt |
37595703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37641315 - 37641251
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
37641315 |
gtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt |
37641251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 37698230 - 37698186
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaatta |
46 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
37698230 |
gtgattggtttggacctcagttgcaacaatttgaaaggtgaatta |
37698186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 37704105 - 37704061
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaatta |
46 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
37704105 |
gtgattggtttggatctcagttgcaacaatctgaaaggtgaatta |
37704061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37713061 - 37712997
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
37713061 |
gtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt |
37712997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37825332 - 37825268
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt |
66 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
37825332 |
gtgattggtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt |
37825268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 693
Target Start/End: Original strand, 37400364 - 37400430
Alignment:
| Q |
627 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37400364 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37400430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 693
Target Start/End: Complemental strand, 37697395 - 37697329
Alignment:
| Q |
627 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37697395 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37697329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 693
Target Start/End: Complemental strand, 37824503 - 37824437
Alignment:
| Q |
627 |
aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37824503 |
aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37824437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 693
Target Start/End: Original strand, 37412657 - 37412894
Alignment:
| Q |
456 |
ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca |
555 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| | || ||||| || |||||| ||| ||||| || ||| ||||| ||||||| ||| |||| |
|
|
| T |
37412657 |
ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca |
37412756 |
T |
|
| Q |
556 |
cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat |
655 |
Q |
| |
|
|||||| ||| | ||||| | | ||| ||| | |||| |||||| | || ||||||| ||||||| |||||||| |||||| |||||| ||| |
|
|
| T |
37412757 |
tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac |
37412856 |
T |
|
| Q |
656 |
aacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
||| | | ||| ||| |||| ||||||||||| ||||| |
|
|
| T |
37412857 |
aacattacaggtcaaattccctcatcattgttccatct |
37412894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 693
Target Start/End: Complemental strand, 37712223 - 37712166
Alignment:
| Q |
636 |
atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37712223 |
atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37712166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 645 - 693
Target Start/End: Complemental strand, 37533690 - 37533642
Alignment:
| Q |
645 |
tttcctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37533690 |
tttcctctaacaacctaacaggccaagttccatcatcactttttcatct |
37533642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 649 - 693
Target Start/End: Complemental strand, 37640458 - 37640414
Alignment:
| Q |
649 |
ctttaataacctaataggccaagttccatcatcattgtttcatct |
693 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
37640458 |
ctttaacaacctaacaggccaagttccatcatcactttttcatct |
37640414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 69 - 490
Target Start/End: Complemental strand, 14554200 - 14553783
Alignment:
| Q |
69 |
tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg |
168 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||||||||||||| ||| || ||||| ||| | || ||||| ||||||||||| |||||||| |
|
|
| T |
14554200 |
tccatttacatggaataaactcattcataatgctactaatttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttgtca |
14554101 |
T |
|
| Q |
169 |
ctgctaaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaat |
268 |
Q |
| |
|
|||||| |||||| || ||||||||||| ||||| |||| ||| ||| || ||||||| |||||| || |||||||| |||||||| |||||| |
|
|
| T |
14554100 |
atgctaaagaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaaggaaatttgtca----agtgacatactctctttgccaaat |
14554005 |
T |
|
| Q |
269 |
cttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactg |
368 |
Q |
| |
|
|||||| ||||||||||| |||||| | |||||||| |||||||| ||||||||||| ||||| |||||||||||| ||||| ||| ||| |
|
|
| T |
14554004 |
cttcaaaaactagatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctg |
14553905 |
T |
|
| Q |
369 |
ccttctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatcttt |
468 |
Q |
| |
|
| ||||| | ||||||||| ||||||||||| | ||||||| |||||| ||||||| ||||||| | || ||||| |||| | ||||||||||||| |
|
|
| T |
14553904 |
ctttctcaggtgaaattccttattccataggtcaattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatcttt |
14553805 |
T |
|
| Q |
469 |
gtggaacctcactcaactaaca |
490 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14553804 |
gtggaacctcactcaactaaca |
14553783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 73 - 360
Target Start/End: Original strand, 24216748 - 24217025
Alignment:
| Q |
73 |
ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||| |||||| | |
|
|
| T |
24216748 |
ttcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttg------c |
24216841 |
T |
|
| Q |
173 |
taaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttc |
272 |
Q |
| |
|
||| |||||| || ||||||||||| ||||| |||| || ||||||| ||||||| |||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
24216842 |
taaagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaag----tgacatcctctctttaccaaatcttc |
24216937 |
T |
|
| Q |
273 |
aagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctc |
360 |
Q |
| |
|
|| ||||||||||||| | ||| | |||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216938 |
aaaaactagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctc |
24217025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 73 - 560
Target Start/End: Original strand, 16841878 - 16842361
Alignment:
| Q |
73 |
ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgc |
172 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| |||||||| ||| || | ||| ||| | || |||||||| ||||||| |||||||| ||| |
|
|
| T |
16841878 |
ttcacttggaagaaactcattcataatgctactaaattaagggatctttatctaaatggagtgaacatgtcttcaattggagagagctctttgtcaatgc |
16841977 |
T |
|
| Q |
173 |
taaggaatttatcgtcctctttggtcgctcttgatctatcaaccactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttc |
272 |
Q |
| |
|
||| ||||| || ||||||||||| ||||| ||||| ||| |||||| ||||||| |||||| ||| |||||| |||||||| ||||||||| |
|
|
| T |
16841978 |
taaacaatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaaggaaatttgttaag----tgacatactctctttgtcaaatcttc |
16842073 |
T |
|
| Q |
273 |
aagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctcatacactgcctt |
372 |
Q |
| |
|
|| |||||||||||| |||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||| | ||||| || |
|
|
| T |
16842074 |
aaagactagatttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgcttt |
16842173 |
T |
|
| Q |
373 |
ctcggatgaaattccctattccataggcaatttgaagtatcttacacatttaggcctttcaaactgtaatttctatggtgttcttcctctatctttgtgg |
472 |
Q |
| |
|
||| | ||||| ||||||||||||| | || |||| |||||| ||||||| ||||||| || ||||| |||| | ||||||||||||||||| |
|
|
| T |
16842174 |
ctcaggagaaatctcctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtgg |
16842273 |
T |
|
| Q |
473 |
aacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacacacctca |
560 |
Q |
| |
|
|||||||||||||||||| | || || || || | ||| || ||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
16842274 |
aacctcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaacacctca |
16842361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 24216460 - 24216500
Alignment:
| Q |
2 |
gtgattggtttggaccttagttgcaacaatctgaacggtga |
42 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
24216460 |
gtgattggtctggaccttagttgcaacaatctgaaaggtga |
24216500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 16841597 - 16841637
Alignment:
| Q |
6 |
ttggtttggaccttagttgcaacaatctgaacggtgaatta |
46 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
16841597 |
ttggtttggacctcagttgcaacaatttgaaaggtgaatta |
16841637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 24217189 - 24217253
Alignment:
| Q |
524 |
gagattccaccattattttcaaacctcacacacctcactacctttggtcttggaaataataactt |
588 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||| |||| | |||| || ||||||||| |
|
|
| T |
24217189 |
gagatcccatcattactttcaaacctcacacacctcacttccttagatcttcaaattaataactt |
24217253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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