View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_90 (Length: 348)
Name: NF1773_low_90
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 25472968 - 25472706
Alignment:
| Q |
11 |
tccatttgtatcactcttgtgttcctctttaatacaacttgtactatgaagaatactttttattgttgatatatttcattttgccttgttnnnnnnnnnn |
110 |
Q |
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| T |
25472968 |
tccatttgtatcactcttgtgttcctctttaatacaacttgtactatgaagaatgctttttattgttaatatattttattttgccttgttaaaaaaaaa- |
25472870 |
T |
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| Q |
111 |
nnnnnnntaaacttagcctagaatttgaactttgagttcccaaatccactgcannnnnnnaaatgcaaataaatttcattaaaa-gaggaccccaaagca |
209 |
Q |
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| T |
25472869 |
--------aaactt-gactagaatttgaactttgagttcccaaatccactgcatttttttaaatgcaaataaatttcattaaaaagaggaccccaaagcc |
25472779 |
T |
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| Q |
210 |
ctaacaataccatgaggaaaccaaaattacaaacaaatatagaatgaatggaataaaatgattgatcaaaatc |
282 |
Q |
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| T |
25472778 |
ctagcaatactatgaggaaaccaaaattacaaacaaatatagaatggatggaataaaatgattggtcaaaatc |
25472706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 25464815 - 25464776
Alignment:
| Q |
227 |
aaaccaaaattacaaacaaatatagaatgaatggaataaa |
266 |
Q |
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| T |
25464815 |
aaaccaaaattacaaacaaatatagaatgaatggaataaa |
25464776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 6299816 - 6299744
Alignment:
| Q |
171 |
aaatgcaaataaatttcattaaaa-gaggaccccaaagcactaacaataccatgaggaaaccaaaattacaaa |
242 |
Q |
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|||||||||||||||| | ||||| ||| || |||||||| |||||||| |||||||||| ||||||||||| |
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| T |
6299816 |
aaatgcaaataaattttaataaaaagagaactacaaagcacaaacaatactatgaggaaacaaaaattacaaa |
6299744 |
T |
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