View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_91 (Length: 347)
Name: NF1773_low_91
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_91 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 338072 - 337741
Alignment:
| Q |
15 |
tttcttcatttgtttaatttgaagtaattaaacttatatgttcccttcccccttaaaggttatgtaatgaataatgatacactctatgtagctcatgaaa |
114 |
Q |
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| T |
338072 |
tttctttatttgtttaatttgaagtaattaaacttatatgttctcttcccccttaaaggttatgtaatgaataatgatacactctatgtagctcatgaaa |
337973 |
T |
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| Q |
115 |
attagctagtatttcnnnnnnngggaaaaagagagtagaatggtagataattccaaataacatcgtagtcatcgattatttaaagttgaaagaaagtgat |
214 |
Q |
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| T |
337972 |
attagctagtatttctttttttgggaaaagaagagtagaatagtagataattccaaataacatcgtagtcatcgattatttaaagttgaaagaaagtgat |
337873 |
T |
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| Q |
215 |
agaaccatgccttctatatttcaaaacagaacacaaaatgacaaacatagaaagtaactgtctttccttccttccttaatttcatttacttcacttttgg |
314 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337872 |
agaaccatgccttctgcatttcaaaacagaacacaaaatgacaaacatagaaagtaactgtctttccttccttccttaatttcatttacttcacttttgg |
337773 |
T |
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| Q |
315 |
catatctcaccaaatttagaaacttaaaattt |
346 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
337772 |
catatctcaccaaatttagaaacttaaaattt |
337741 |
T |
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