View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_92 (Length: 345)

Name: NF1773_low_92
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_92
NF1773_low_92
[»] chr8 (1 HSPs)
chr8 (10-345)||(36982676-36982993)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 36982993 - 36982676
Alignment:
Q  10 aagaatattaggaaaataagtaagatagaactagtagcgagttatgtacgtagcatgaactcttcagattgaagatgtgtcatgtgtctgacatcgacat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  36982993 aagaatattaggaaaataagtaagatagaactagtagcgagttatgta----gcatgcactcttcagattgaagatgtgtcgtgtgtctgacatcgacat 36982898  T
Q  110 gaatctgacacatgtatttatttcatcagttctattttctaaaattaggac-tgatgtctatgtgctagtgtcggtctcagtgttccatagagacagtgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||               |||||||||||    
T  36982897 gaatctgacacatgtatttatttcatcagttctattttctaaaattaggacatgatgtctatgtgctagtgtcg---------------agagacagtgt 36982813  T
Q  209 ctatgatgaactcgaattactgaaagggacacctttcatatacttattcatatgatgaactcaattacgtaagtgtttctaatttttgaaagaacttgtt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36982812 ctatgatgaactcgaattactgaaagggacacctttcatatacttattcatatgatgaactcaattacgtaagtgtttctaatttttgaaagaacttgtt 36982713  T
Q  309 tgttaagaacaaacatacctttatccacagaacatca 345  Q
    ||| |||||||||||||||||||||||||||||||||    
T  36982712 tgtgaagaacaaacatacctttatccacagaacatca 36982676  T

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