View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_95 (Length: 343)
Name: NF1773_low_95
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 3134938 - 3135252
Alignment:
| Q |
14 |
gttattcattgcagtcttatcctatttaagatattagtttatgtgttacatgcagagaatgtctagctcacaccaaaacatatgttaaagagaaaaatat |
113 |
Q |
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| T |
3134938 |
gttattcattgcaatcttatcctattcaagatattagtttatgtgttacacgcagagaatctccggctcacaccaaaacatatgttaaagagaaaaatat |
3135037 |
T |
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| Q |
114 |
tcaagaaataatatgtacatgtataataagttaaaaatgaatcattaattctttttagtgagggcaaataagaaaggaaaattaagaaattaaattgttc |
213 |
Q |
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| T |
3135038 |
tcaagaaataatatgtacatgtataataagttaaaaatgaatcattaattctttttagagaggacaaataagaatggaaaattaagaaattaaattgttc |
3135137 |
T |
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| Q |
214 |
tcacagaaatatattctaatggaatatgtaaatataattttgaaagcaattattttaaattttataataaatgatattagagacacacgcaccattgaat |
313 |
Q |
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| T |
3135138 |
tcacagaaatatattctaatggaatatgtaaatataattttgaaatcaattattttaaattttataataaatgatatcagagacacacgcaccattgaat |
3135237 |
T |
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| Q |
314 |
gattattctattgat |
328 |
Q |
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| T |
3135238 |
gattattctattgat |
3135252 |
T |
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