View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_99 (Length: 337)
Name: NF1773_low_99
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 397887 - 398212
Alignment:
| Q |
1 |
aagaagaagagttctgaaataaagaacgcaattcgaaaccctgactgatggaatctgaatcatcacttgttcttccatggcattgggtgattgaagccct |
100 |
Q |
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| T |
397887 |
aagaagaagagttctgaaataaagaacgcaattcgaaaccctgactgatggaatctgaatcatcacttgttcttccatggcattgggtgattgaagccct |
397986 |
T |
|
| Q |
101 |
agctggtttcaaagaaatcaccttacccactttacaagctttgattgatgcttcccttttaacgcatcatgatttttctgaaactaccaaagatttgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
397987 |
agctggtttcaaagaaatcaccttacccactttacaagctttgattgatgcttcccttttaacgcatcatgatttttctgaaactaccaaagatttgatt |
398086 |
T |
|
| Q |
201 |
gctttgaagtgtttggaggaactttacc------cttcttcttcaacaacaacattcgaggaacttgattcttcgctttcctcccaagacgttcttcttc |
294 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
398087 |
gctttgaagtgtttggaggaactttacccttcttcttcttcttcaacaacaacattggaggaacttgattcttcgctttcatcccaagacgttcttcttc |
398186 |
T |
|
| Q |
295 |
aaatattgcatcaggtaagtaactat |
320 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
398187 |
aaatattgcatcaggtaagtaactat |
398212 |
T |
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