View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17740_high_1 (Length: 451)
Name: NF17740_high_1
Description: NF17740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17740_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 51530375 - 51529936
Alignment:
| Q |
16 |
caaattagtctaaataagttgatgttgaatgttaaagaaccaattttgtttgggtattccttatgtatgaaagatgattgtggccacatcatgttagcac |
115 |
Q |
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| T |
51530375 |
caaattagtctaaataagttgatgttgaatgttaaagaaccaattttgtttgggtattccttatgtatgaaagatgattgtggccacatcatgttagcac |
51530276 |
T |
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| Q |
116 |
ccatttcaactatacgaaatattggttgagctaaaacctgcatcattataacaacatctctaatacgatctcttttatcaactgattagataaaaataag |
215 |
Q |
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| T |
51530275 |
ccatttcaactatacgaaatattggttgagctaaaacctgcatcattataacaacatctctaatacgatctattttatcaactgattagataaaaataag |
51530176 |
T |
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| Q |
216 |
ggtataa--------------cagacgagagaaattcgattacctgatatgctcccaccatatggactataatgcatacattccccaaagcaaccaacaa |
301 |
Q |
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| T |
51530175 |
ggtataattaattacaattaacagacgagagaaattcgattacctgatatgctcccaccatatggactataatgcatacattccccaaagcaaccaacaa |
51530076 |
T |
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| Q |
302 |
gaagggctcataaaatccaaaaccagtgaggatgttccctggggtgtgatcaccaaatgcagcatagccaagtgaaccacataggaggaaaagtattgtc |
401 |
Q |
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| T |
51530075 |
gaagggctcataaaatccaaaaccagtgaggatgttccctggggtgtgatcaccaaatgcagcatagccaagtgaaccacataggaggaaaagtattgtc |
51529976 |
T |
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| Q |
402 |
attgtagtgatccccaacatatttgccttcctcatctgtg |
441 |
Q |
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| T |
51529975 |
attgtagtgatccccaacatatttgccttcctcatctgtg |
51529936 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 221965 - 222038
Alignment:
| Q |
333 |
atgttccctggggtgtgatcaccaaatgcagcatagccaagtgaaccacataggaggaaaagtattgtcattgt |
406 |
Q |
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| T |
221965 |
atgtttcctggtgtgtggtcaccaaaagcagcatagccaaggcaactacatagtaggaatatcattgtcattgt |
222038 |
T |
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