View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17740_high_2 (Length: 349)
Name: NF17740_high_2
Description: NF17740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17740_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 14783866 - 14783540
Alignment:
| Q |
8 |
ccaagaaaatttaggttttaaaaaatatttaattattcgagg-ataccacgacatctttcgattctaaggattgatgatataagtgtgctcatattagat |
106 |
Q |
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| T |
14783866 |
ccaacaaaatttaggttttaaaaaatatttaattattcgagggataccacaacatctttcgattctaaggattgatgatatgaatgtggtcatattagat |
14783767 |
T |
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| Q |
107 |
agaccttatgttttaactatgtattacaatgtagcaatctccattcttt-caacnnnnnnnnntgtagcaatctccattagaaatacacatacaattttg |
205 |
Q |
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| T |
14783766 |
agaccttatgttttaactatgtattacaatgtagcaatctccgttgtttaaaaaaaaaaaaaatgtagcaatctccgttagaaatacacatacaattttg |
14783667 |
T |
|
| Q |
206 |
agatcctaagtttaaagtctgatcctttcnnnnnnnnnnnnnnnnngttgagtagttgagctaataatacaaaccgtccaattaaaattttgttaactct |
305 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14783666 |
agatcctaactttaaagtctgatcctttc-aaaaaaaaaaaaaaaagttgagtagttgagctaataatacaaaccgtccaattaaaattttgttaactct |
14783568 |
T |
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| Q |
306 |
tgaatatttccaagttttcctattactg |
333 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
14783567 |
tgaatatttccaagttttcctattactg |
14783540 |
T |
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