View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17740_low_11 (Length: 211)

Name: NF17740_low_11
Description: NF17740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17740_low_11
NF17740_low_11
[»] chr6 (15 HSPs)
chr6 (18-198)||(4602460-4602640)
chr6 (22-154)||(4617737-4617869)
chr6 (107-196)||(4299194-4299283)
chr6 (127-196)||(4259547-4259616)
chr6 (23-176)||(4592924-4593077)
chr6 (19-198)||(4626619-4626798)
chr6 (34-181)||(4514421-4514568)
chr6 (107-181)||(4470488-4470562)
chr6 (117-181)||(4561189-4561253)
chr6 (117-181)||(4574993-4575057)
chr6 (29-176)||(4564404-4564551)
chr6 (127-181)||(4266559-4266613)
chr6 (107-184)||(4622822-4622899)
chr6 (81-181)||(4458280-4458380)
chr6 (127-181)||(4481378-4481432)
[»] chr3 (1 HSPs)
chr3 (22-154)||(1281829-1281961)
[»] chr5 (2 HSPs)
chr5 (127-196)||(24107045-24107114)
chr5 (127-181)||(24103684-24103738)
[»] scaffold0199 (1 HSPs)
scaffold0199 (22-148)||(185-311)
[»] chr8 (2 HSPs)
chr8 (22-148)||(1674948-1675074)
chr8 (83-181)||(20863192-20863290)
[»] chr7 (1 HSPs)
chr7 (127-193)||(3087093-3087159)
[»] scaffold0477 (1 HSPs)
scaffold0477 (107-196)||(4062-4151)
[»] scaffold0288 (1 HSPs)
scaffold0288 (120-193)||(3104-3177)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4602640 - 4602460
Alignment:
Q  18 attcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4602640 attcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactattcttttga 4602541  T
Q  118 atacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4602540 atacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgc 4602460  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 4617869 - 4617737
Alignment:
Q  22 ttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatac 121  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||| || |||| | |||| ||| |||||||||||||||    
T  4617869 ttgactttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgcagatcgagttaacaaagacactactattcttttgaatac 4617770  T
Q  122 ttacaatgaacttgagagtgatgtaatgaatgc 154  Q
    || |||||||||||||||||||||||| |||||    
T  4617769 tttcaatgaacttgagagtgatgtaataaatgc 4617737  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 4299194 - 4299283
Alignment:
Q  107 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 196  Q
    |||| |||| ||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  4299194 tattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggaccttt 4299283  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 4259547 - 4259616
Alignment:
Q  127 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 196  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||| ||||||||    
T  4259547 atgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggaccttt 4259616  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4593077 - 4592924
Alignment:
Q  23 tgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatact 122  Q
    ||||||||||||||||||||||||||||||||||||| || | ||  |  ||||  | || |||| |  | ||| | |||||| |||| |||||||||||    
T  4593077 tgactatatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggctgataaagatcataaaaactctactattattttgaatact 4592978  T
Q  123 tacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttct 176  Q
    | |||||||||||||||||||||||| ||||| || |  |||||||| ||||||    
T  4592977 ttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttct 4592924  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 4626798 - 4626619
Alignment:
Q  19 ttcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaa 118  Q
    ||||| ||| ||| ||||||||| |||| |||||| | |||||||||||  |  |||||   |||||||||||| | ||||  ||   |||| |||| ||    
T  4626798 ttcttaactttataaggacaacaaatcctaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaa 4626699  T
Q  119 tacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgc 198  Q
     |||||| ||||||||||| |||||||||||||||| || ||||||| ||||| |||| ||||||| || ||||||||||    
T  4626698 cacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacgttcctttctgtatataccattggacctttgc 4626619  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 4514421 - 4514568
Alignment:
Q  34 ggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaact 133  Q
    ||||||||||| | |||||| | ||| |||||||  | |||||||| | ||||||| || ||||||  |||  |||| |||| |||||||  ||||| ||    
T  4514421 ggacaacagatgctaatgatttgatgttagaatttatctttgaaatggtagatagacttcatagagcttctgctatttttttaaatacttctaatgatct 4514520  T
Q  134 tgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    |||||||||||| |||||||| || ||||||||| |||||||| ||||    
T  4514521 tgagagtgatgttatgaatgctctttattctatgctcccttctctata 4514568  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 4470562 - 4470488
Alignment:
Q  107 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    |||| ||||||||||||  ||||||||||| |||||||| ||||||| ||| |||||||| ||||||||| ||||    
T  4470562 tattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattcccttctctata 4470488  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 4561253 - 4561189
Alignment:
Q  117 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    |||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  4561253 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctata 4561189  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 4575057 - 4574993
Alignment:
Q  117 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    |||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  4575057 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctata 4574993  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 4564551 - 4564404
Alignment:
Q  29 tatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaat 128  Q
    ||||||||||||||||||||||||||||||| |||| ||  |  ||||    || |||| | ||  | |||||||||  ||| |||||||||||| | ||    
T  4564551 tatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcttggagactctacaattgttttgaatactttccat 4564452  T
Q  129 gaacttgagagtgatgtaatgaatgcactatattctatgttcccttct 176  Q
    |||||| ||||||||||||| ||||| || |  |||||||| ||||||    
T  4564451 gaactttagagtgatgtaataaatgctctctcctctatgtttccttct 4564404  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 4266559 - 4266613
Alignment:
Q  127 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||| ||||    
T  4266559 atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatata 4266613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 4622899 - 4622822
Alignment:
Q  107 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatac 184  Q
    |||| |||| |||||||| ||||||||||||| |||||  |||||||| || ||||| |||||||| ||||| |||||    
T  4622899 tattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattcaatgttcccatctttgtatac 4622822  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 4458380 - 4458280
Alignment:
Q  81 gcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttat 180  Q
    |||||||||| | |||||| ||||  |||| || | |||||||   ||||||||||||||||||| |||||| | || || ||||||||||||||| |||    
T  4458380 gcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttcccttctatat 4458281  T
Q  181 a 181  Q
    |    
T  4458280 a 4458280  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 4481432 - 4481378
Alignment:
Q  127 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    ||||||||||||||||||| |||||| | || |||||||| ||||||||| ||||    
T  4481432 atgaacttgagagtgatgttatgaattctctctattctatattcccttctctata 4481378  T

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Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 1281961 - 1281829
Alignment:
Q  22 ttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatac 121  Q
    |||||| ||||||||||| ||||| ||| ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  1281961 ttgactttatcaggacaagagatcgaaacgatattatgttagaattctttattgaaatggcagatagagttaatagagactctactattcttttgaatac 1281862  T
Q  122 ttacaatgaacttgagagtgatgtaatgaatgc 154  Q
    || |||||||||||||||||||||||| |||||    
T  1281861 tttcaatgaacttgagagtgatgtaataaatgc 1281829  T

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Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 24107114 - 24107045
Alignment:
Q  127 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 196  Q
    |||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||| ||||||||    
T  24107114 atgaacttgagagtgatgtaatgaatacgctctattctatgttcccttttttatatactattggaccttt 24107045  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 24103738 - 24103684
Alignment:
Q  127 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||| ||||    
T  24103738 atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatata 24103684  T

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Target: scaffold0199 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 311 - 185
Alignment:
Q  22 ttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatac 121  Q
    |||||| |||||| ||||| |||||||||||||||||| |||| || ||  ||||  | || |||| | || | ||||||||||  ||| ||||||||||    
T  311 ttgactgtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatac 212  T
Q  122 ttacaatgaacttgagagtgatgtaat 148  Q
    || ||||||||||||||||||||||||    
T  211 tttcaatgaacttgagagtgatgtaat 185  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 1675074 - 1674948
Alignment:
Q  22 ttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatac 121  Q
    |||||| |||||| ||||| |||||||||||||||||| |||| || ||  ||||  | || |||| | || | ||||||||||  ||| ||||||||||    
T  1675074 ttgactgtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatac 1674975  T
Q  122 ttacaatgaacttgagagtgatgtaat 148  Q
    || ||||||||||||||||||||||||    
T  1674974 tttcaatgaacttgagagtgatgtaat 1674948  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 20863192 - 20863290
Alignment:
Q  83 agatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 181  Q
    |||||||||| | |||| ||||  |||| |||| ||||||| |||||| |||||||||||||| |||||||  || |||||||||||||||||| ||||    
T  20863192 agatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttcccttctctata 20863290  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 3087159 - 3087093
Alignment:
Q  127 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacc 193  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||||    
T  3087159 atgaacttgagagtgatgtaatgaatgcgctatattctgtgttcccttcattatataccattggacc 3087093  T

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Target: scaffold0477 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 4062 - 4151
Alignment:
Q  107 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 196  Q
    |||| |||| || |||||| ||||||||||||| | |||| ||||||| || |||||||||||||||||||||||||| || ||||||||    
T  4062 tattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggaccttt 4151  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 3104 - 3177
Alignment:
Q  120 acttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacc 193  Q
    ||||| ||||||||||||||||||||| ||||||| ||  | ||||||||||| || ||||| | |||||||||    
T  3104 acttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacagtatcggacc 3177  T

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