View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17740_low_2 (Length: 420)
Name: NF17740_low_2
Description: NF17740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17740_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 228 - 404
Target Start/End: Complemental strand, 52113498 - 52113322
Alignment:
| Q |
228 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacggcctcccattcgtaggt |
327 |
Q |
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| T |
52113498 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacggcctcccattcgtaggt |
52113399 |
T |
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| Q |
328 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaata |
404 |
Q |
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| T |
52113398 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaata |
52113322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 52113712 - 52113520
Alignment:
| Q |
11 |
catcatcatcacttacctcctcaatatcttatactttccttcaaccagaatttgcattaaaaagaacgataaaacaccgcaatcgctgctccatttccaa |
110 |
Q |
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| T |
52113712 |
catcatcatcacttacctcctcaatatcttatactttccttcaaccagaatttccatttaaaagaacgataaaacaccacaatcgctgctccatttccaa |
52113613 |
T |
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| Q |
111 |
atgtcctttcattccaatttcagtcactccattgaaagcatcagtgtccaacccagataagacatnnnnnnnaactccaattactccaataga |
203 |
Q |
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| T |
52113612 |
atgtcctttcactccaatttcagcgactccattgaaagcatcagtgtccaacccagatacgacatcctccccaattccaattactccaataga |
52113520 |
T |
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