View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17740_low_5 (Length: 319)
Name: NF17740_low_5
Description: NF17740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17740_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 38858753 - 38859064
Alignment:
| Q |
9 |
agcaaaggggaaacctacacaacagcagaaaaaagcgtttgtccagagcaaagacaactgaaaggaacataacaaaggaataaacattgtggatttcata |
108 |
Q |
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| T |
38858753 |
agcaaagaggaaacctacacaacagcagaaaaaagcgtttgtccagagcaaagacaactgaaaggaacataacaaaggaataaacattgtagatttcatg |
38858852 |
T |
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| Q |
109 |
ggttccacatctaaaggaaaggaacctgagataatggccttattccttagaatcttgatgacc-nnnnnnnnctaccagtaatcaacaaattgataatgt |
207 |
Q |
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| T |
38858853 |
ggttccacatctaaaggaaaggaacctgagataatggccttattccttagaatcttgatgaccaaaaaaaaactaccagtaatcaacaaattgataatgt |
38858952 |
T |
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| Q |
208 |
tgatgtagaacttgacaaggcaccttcaagtgattgaatgaatttggagcaagacaacactcaactgaacatcaaggtgcataccataatatgtgaggtg |
307 |
Q |
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| T |
38858953 |
tgatgtagaacttgacaaggcaccttcaagtgattgaatgaatttggagcaagacaacactcaactgaacatcaaggtgcataccataatatgtgaggtg |
38859052 |
T |
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| Q |
308 |
atactaatttgc |
319 |
Q |
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| T |
38859053 |
atactaatttgc |
38859064 |
T |
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