View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17740_low_8 (Length: 283)
Name: NF17740_low_8
Description: NF17740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17740_low_8 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 1182299 - 1182042
Alignment:
| Q |
20 |
acatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataat |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182299 |
acatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataat |
1182200 |
T |
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| Q |
120 |
caacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcac |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182199 |
caacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcac |
1182100 |
T |
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| Q |
220 |
atcaatggttttcttcttctctggtaattcaactaattcacgggtgttattcatctca |
277 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
1182099 |
atcaatggttttcttcttctctgataattcaactaattcacgggtgttattcttctca |
1182042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 18194189 - 18194053
Alignment:
| Q |
101 |
gcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcattttta |
200 |
Q |
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||||| || |||||||| ||||||||||||||||| ||||| ||||||||||||| || ||||||| ||| || | || ||||| ||||||| ||| | |
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| T |
18194189 |
gcaaatacctcattatagtcaacaccatatctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttca |
18194090 |
T |
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| Q |
201 |
ccttgaaaattcatttcacatcaatggttttcttctt |
237 |
Q |
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| T |
18194089 |
ccttgaaaatccatttaacatcaatggttttcttctt |
18194053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 8169603 - 8169841
Alignment:
| Q |
20 |
acatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataat |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||| ||| ||||||| ||||||||||| | |
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| T |
8169603 |
acatctaaatgaaacaatgaccatttcttactgctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaaagacttcattatagt |
8169702 |
T |
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| Q |
120 |
caacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcac |
219 |
Q |
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||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| |||||||| |
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| T |
8169703 |
caatttcatattaatgtaggaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcac |
8169802 |
T |
|
| Q |
220 |
atcaatggttttcttcttctctggtaattcaactaattc |
258 |
Q |
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| T |
8169803 |
attaatgtttttcttcttcgctggtaagttaactaattc |
8169841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 32369350 - 32369486
Alignment:
| Q |
101 |
gcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcattttta |
200 |
Q |
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||||| || |||||||| |||||||||||||||| | ||| ||||| || || | || ||||||| ||| |||| || |||| ||||||| ||| | |
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| T |
32369350 |
gcaaatacctcattatagtcaacaccatatctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttca |
32369449 |
T |
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| Q |
201 |
ccttgaaaattcatttcacatcaatggttttcttctt |
237 |
Q |
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| T |
32369450 |
ctttgaaaatccatttaacatcaatggttttcttctt |
32369486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 4959235 - 4959452
Alignment:
| Q |
20 |
acatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataat |
119 |
Q |
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||||||||||| | |||||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || |||||||| | |
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| T |
4959235 |
acatctaaatgtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagt |
4959334 |
T |
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| Q |
120 |
caacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcac |
219 |
Q |
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| T |
4959335 |
ctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatccatttaac |
4959434 |
T |
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| Q |
220 |
atcaatggttttcttctt |
237 |
Q |
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|||||||||||||||||| |
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| T |
4959435 |
atcaatggttttcttctt |
4959452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
139 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
221 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
139 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
221 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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