View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17741_high_1 (Length: 679)

Name: NF17741_high_1
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17741_high_1
NF17741_high_1
[»] chr3 (5 HSPs)
chr3 (1-674)||(51811639-51812311)
chr3 (159-214)||(1697709-1697763)
chr3 (177-216)||(23537756-23537795)
chr3 (410-438)||(15282690-15282718)
chr3 (171-215)||(53007332-53007376)
[»] chr7 (3 HSPs)
chr7 (170-209)||(15328987-15329026)
chr7 (184-216)||(2847392-2847424)
chr7 (177-213)||(33745761-33745797)
[»] chr4 (4 HSPs)
chr4 (82-129)||(1605292-1605339)
chr4 (170-209)||(4710288-4710327)
chr4 (169-215)||(12828215-12828261)
chr4 (170-216)||(16025021-16025067)
[»] chr1 (2 HSPs)
chr1 (159-214)||(10678162-10678217)
chr1 (408-468)||(25809306-25809366)
[»] chr5 (4 HSPs)
chr5 (170-204)||(24208267-24208301)
chr5 (177-215)||(39298421-39298459)
chr5 (179-220)||(25334715-25334756)
chr5 (159-215)||(28197511-28197567)
[»] chr8 (5 HSPs)
chr8 (170-215)||(13987326-13987371)
chr8 (170-215)||(27187219-27187264)
chr8 (184-216)||(28008603-28008635)
chr8 (184-216)||(28065906-28065938)
chr8 (184-216)||(30943334-30943366)


Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 51811639 - 51812311
Alignment:
Q  1 aaaatgctatttttgatgttatggaacctaacacagacccaacgtgacttaacctcacattgacttgtaataagcatgtttagcgtggcttaagtcacgt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  51811639 aaaatgttatttttgatgttatggaacctaacacagacccaacgtgacttaacctcacattgacatgtaataagcatgtttagcgtgacttaagtcacgt 51811738  T
Q  101 tgattttaacaccttcgtgagttaagtcaactcagcgtgacttaagtcagattgtggatattttcttcggtttggatgggagggagcaattttttatggg 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||    
T  51811739 tgatattaacaccttcgtgagttaagtcaactcagcgtgacttaagtcaggttgtaggtattttcttcggtttggatgggagggagcaattttttatggg 51811838  T
Q  201 agaagagcaattttctcaagaaattgaagagtaaagtgggccctaagttaaaacgcaagggatcaatgagcccataatagtatgagtgggaatcagtgag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  51811839 agaagagcaattttctcaagaaattgaagagtaaagtgggccctaagtgaaagcccaaaggatcaatgagcccataatagtatgagtgggaatcagtgag 51811938  T
Q  301 tgctcaattgctcaatgatagaaatgcaaagcaactagcaaacaaatatgcccctctacaaaaggtagtgttgatttcgcagtgaaacctccctctaatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||     
T  51811939 tgctcaattgctcaatgatagaaatgcaaagcaactagcaaacaaatatgcccctctac-aaaggtagtgttgatttcggagtgaaacctccctctaatt 51812037  T
Q  401 ctaaaagacaaaagttaatgtatttgatttaaaatttgattcaaatacatctatatttgttgatttaactttcttttaggagtatttttgaaaatccaga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51812038 ctaaaagacaaaagttaatgtatttgatttaaaatttgattcaaatacatctatatttgttgatttaactttcttttaggagtatttttgaaaatccaga 51812137  T
Q  501 catgtctattctttataaattgctttgatcatcttcgcacttgttggagacccataatttcttttgaagctgctattatattttcacgtagaagnnnnnn 600  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          
T  51812138 catgtctattctttataaattgctttgatcatctttgcacttgttggagacccataatttcttttgaagctgctattattttttcacgtagaagaaaaaa 51812237  T
Q  601 ntagttatatttatgctcgtgtcaaataaacaacgtatatcaaccttttaaaaagattatgctctatcaatatt 674  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51812238 atagttatatttatgctcgtgtcaaataaacaacgtatatcaaccttttaaaaagattatgctctatcaatatt 51812311  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 1697709 - 1697763
Alignment:
Q  159 tattttcttcggtttggatgggagggagcaattttttatgggagaagagcaatttt 214  Q
    ||||||| || ||||| || ||||||||||||||| ||||||||||||||||||||    
T  1697709 tattttcgtcagtttgtataggagggagcaatttt-tatgggagaagagcaatttt 1697763  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 23537795 - 23537756
Alignment:
Q  177 tgggagggagcaattttttatgggagaagagcaattttct 216  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  23537795 tgggagtgagcaattttatatgggagaagagcaattttct 23537756  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 438
Target Start/End: Complemental strand, 15282718 - 15282690
Alignment:
Q  410 aaaagttaatgtatttgatttaaaatttg 438  Q
    |||||||||||||||||||||||||||||    
T  15282718 aaaagttaatgtatttgatttaaaatttg 15282690  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 53007376 - 53007332
Alignment:
Q  171 tttggatgggagggagcaattttttatgggagaagagcaattttc 215  Q
    |||| ||||||||||||||| ||  ||||||||||||||||||||    
T  53007376 tttgtatgggagggagcaatattggatgggagaagagcaattttc 53007332  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 15328987 - 15329026
Alignment:
Q  170 gtttggatgggagggagcaattttttatgggagaagagca 209  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  15328987 gtttggatgggagtgaacaattttttatgggagaagagca 15329026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 2847424 - 2847392
Alignment:
Q  184 gagcaattttttatgggagaagagcaattttct 216  Q
    ||||||||||||||||| |||||||||||||||    
T  2847424 gagcaattttttatgggtgaagagcaattttct 2847392  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 33745761 - 33745797
Alignment:
Q  177 tgggagggagcaattttttatgggagaagagcaattt 213  Q
    |||||| || |||||||||||||||||||||||||||    
T  33745761 tgggagcgaacaattttttatgggagaagagcaattt 33745797  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 1605339 - 1605292
Alignment:
Q  82 agcgtggcttaagtcacgttgattttaacaccttcgtgagttaagtca 129  Q
    |||||| ||||||||||||||| |||||||||| ||||| ||||||||    
T  1605339 agcgtgacttaagtcacgttgaatttaacacctgcgtgacttaagtca 1605292  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 4710327 - 4710288
Alignment:
Q  170 gtttggatgggagggagcaattttttatgggagaagagca 209  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  4710327 gtttggttgggagcgagcaattttttatgggagaagagca 4710288  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 12828261 - 12828215
Alignment:
Q  169 ggtttggatgggagggagcaattttttatgggagaagagcaattttc 215  Q
    |||||| |||| || ||||||||||||||| ||||||||||||||||    
T  12828261 ggtttgtatggaagtgagcaattttttatgagagaagagcaattttc 12828215  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 16025067 - 16025021
Alignment:
Q  170 gtttggatgggagggagcaattttttatgggagaagagcaattttct 216  Q
    |||||||| |||| ||||||||||| || ||||||||||||||||||    
T  16025067 gtttggataggagtgagcaatttttgattggagaagagcaattttct 16025021  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 10678162 - 10678217
Alignment:
Q  159 tattttcttcggtttggatgggagggagcaattttttatgggagaagagcaatttt 214  Q
    ||||||||||  |||  ||||||||||||||||||  |||||||||||||||||||    
T  10678162 tattttcttccttttttatgggagggagcaattttggatgggagaagagcaatttt 10678217  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 25809366 - 25809306
Alignment:
Q  408 acaaaagttaatgtatttgatttaaaatttgattcaaatacatctatatttgttgatttaa 468  Q
    ||||||||||||||||||| |  |||| |||| | |||||||||||| |||||||| ||||    
T  25809366 acaaaagttaatgtatttggtccaaaagttgaattaaatacatctatttttgttgacttaa 25809306  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 24208301 - 24208267
Alignment:
Q  170 gtttggatgggagggagcaattttttatgggagaa 204  Q
    ||||||||||||| |||||||||||||||||||||    
T  24208301 gtttggatgggagtgagcaattttttatgggagaa 24208267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 39298459 - 39298421
Alignment:
Q  177 tgggagggagcaattttttatgggagaagagcaattttc 215  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  39298459 tgggagtgagcaattttttatggaagaagagcaattttc 39298421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 25334715 - 25334756
Alignment:
Q  179 ggagggagcaattttttatgggagaagagcaattttctcaag 220  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  25334715 ggagggagcaattttggatgggagaagagcaattttcccaag 25334756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 28197511 - 28197567
Alignment:
Q  159 tattttcttcggtttggatgggagggagcaattttttatgggagaagagcaattttc 215  Q
    ||||||| || ||||| || | || |||||||||| |||||||||||||||||||||    
T  28197511 tattttcgtcagtttgtatagaagtgagcaattttgtatgggagaagagcaattttc 28197567  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 13987371 - 13987326
Alignment:
Q  170 gtttggatgggagggagcaattttttatgggagaagagcaattttc 215  Q
    |||||| ||| || ||||||||||| ||||||||||||||||||||    
T  13987371 gtttggttggaagtgagcaatttttgatgggagaagagcaattttc 13987326  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 27187264 - 27187219
Alignment:
Q  170 gtttggatgggagggagcaattttttatgggagaagagcaattttc 215  Q
    ||||| ||||||| ||| ||||||||||||||||||| ||||||||    
T  27187264 gtttgtatgggagtgagtaattttttatgggagaagaccaattttc 27187219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 28008635 - 28008603
Alignment:
Q  184 gagcaattttttatgggagaagagcaattttct 216  Q
    |||||||||||||||||||||||||| ||||||    
T  28008635 gagcaattttttatgggagaagagcatttttct 28008603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 28065938 - 28065906
Alignment:
Q  184 gagcaattttttatgggagaagagcaattttct 216  Q
    |||||||||||||||||||||||||| ||||||    
T  28065938 gagcaattttttatgggagaagagcatttttct 28065906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 30943366 - 30943334
Alignment:
Q  184 gagcaattttttatgggagaagagcaattttct 216  Q
    ||||||||||||||| |||||||||||||||||    
T  30943366 gagcaattttttatgagagaagagcaattttct 30943334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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