View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17741_high_3 (Length: 449)
Name: NF17741_high_3
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17741_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 22550424 - 22549990
Alignment:
| Q |
17 |
agtgacaatagcataaagttagggttttcgatgtaatatatcgctattaaaaccatgcactgccacttcaggttgaatgtgagtctgacacatctcgttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
22550424 |
agtgacaatagcataaagttagggttttcgatgtaatatatcgctattaaaaccatgcactgccacttcagattgaatgtgagtctgacacgtctcgttg |
22550325 |
T |
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| Q |
117 |
tcaaatactcgcgcgacatgcttataacacttattcaactataaggatctaacatgacatggctgggaaacgattccgagtgctagcaacacatccaata |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22550324 |
tcaaatactcgcgcgacatgcttataactcttattcaactataaagatct-acatgacatggctgggaaacgattccgagtgctagcaacacatccaata |
22550226 |
T |
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| Q |
217 |
tggctagacatgaaaaggtaccccattggtaccaacatttttcaaata-----annnnnnnnnattgatgatgatcaagtataggtgatggatattaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
22550225 |
tggctagacatgaaaaggtaccccattggtaccaacatttttcaaatattttttatattttttattgatgatgatcaagtatgggtgatggatattaaaa |
22550126 |
T |
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| Q |
312 |
attgatcagattctttttagcttttgatattaaatggattaagtaaatgtaaaaatatagttccatatttcttcatcttgtcttagaattatttttgatn |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22550125 |
attgatcagattctttttagcttttgatattaaatggattaagtaaatgtaaaaatatagttccatatttcttcatcttgtcttagaattattttacata |
22550026 |
T |
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| Q |
412 |
nnnnnntgtgttaaaattgtataactctaaggattatt |
449 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
22550025 |
aaaaaatgtgttaaaattgtataa--ctaaggattatt |
22549990 |
T |
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