View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17741_high_4 (Length: 381)
Name: NF17741_high_4
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17741_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 9298686 - 9298957
Alignment:
| Q |
1 |
caaacctatgaaagtgtatgtatagtccatggaagcatataattggggggaatgaagcctggtccgagaatactttacaatccatgaccacaaatttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9298686 |
caaacctatgaaagtgtatgtatagtccatggaagcatataattggggggaatgaagcctggtccgagaatactttacaatccatgaccacaaatttgca |
9298785 |
T |
|
| Q |
101 |
ttagatcgagaagaaagcgtcctcgagccagacaacattcccctcaaaaaataaagcttcccaatagtctttttcttagagttttgtaatggt--cacac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9298786 |
ttagatcgagaagaaagcgtcctcgagccagacaacattcccctcaaaaaataaagcttcccaatagtctttttcttagagttttgtaatggtcacacac |
9298885 |
T |
|
| Q |
199 |
acacactttgtgttctcttttgaactcttgattcatcccccaaaagtctcggctaccttcaagggggagtta |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9298886 |
acacactttgtgttctcttttgaactcttgattcatcccccaaaagtctcggctaccttcaagggggagtta |
9298957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 9299014 - 9299049
Alignment:
| Q |
327 |
gggggttataagaagagtaaaaataaaggagaaatg |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9299014 |
gggggttataagaagagtaaaaataaaggagaaatg |
9299049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University