View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17741_low_2 (Length: 480)
Name: NF17741_low_2
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17741_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 26 - 465
Target Start/End: Complemental strand, 30585330 - 30584890
Alignment:
| Q |
26 |
aaggaagatggagcatattatgtaatatatattattattttctaaaaatgtaacaaaagaagagtccaaaagaggcaaaaacttaaggatgaatcaagac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30585330 |
aaggaagatggagcatattatgtaatatatattattattttcaaaaaaagtaacaaaagaagagtccaaaagaggcaaaaacttaaggatgaatcaaaac |
30585231 |
T |
|
| Q |
126 |
aaggaaaccctaagtaggaaggagagggcaaaagaatggtcacccttt-ggaaccttggctgtagtaaagggtcatgtattcgcaggccctgtcaattcc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30585230 |
aaggaaaccctaagtaggaaggagagggcaaaagaatggtcacccttttggaaccttggctgtagtaaagggtcatgtattcgcaggccctgtcaattcc |
30585131 |
T |
|
| Q |
225 |
ttacggcccccacaatttgaaaaacgcttgtataggacgcaacacaatattttactccaatcttcttaaaccccaccttattcctctacttactggaagg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30585130 |
ttacggcccccacaatttgaaaaacgcttgtataggacgcaacacaatattttactccaatcttcttaaaccccaccttattcctctacttactggaagg |
30585031 |
T |
|
| Q |
325 |
gtaattaagttctatactcacttatggtagatattattccattttccatctgtggaatacggagttggtcagagagtttttaagtttttggtaaatttgg |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30585030 |
gtaattaagttctatactcacttatggtagatattattccattttccatctgtggaatatgtagttggtcagagagtttttaattttttggtaaatttgg |
30584931 |
T |
|
| Q |
425 |
tgcctaagattacgatgtctaactgttctcttctgcttatt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30584930 |
tgcctaagattacgatgtctaactgttctcttctgcttatt |
30584890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University