View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17741_low_5 (Length: 355)
Name: NF17741_low_5
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17741_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 44923800 - 44924100
Alignment:
| Q |
18 |
gtaaccaccttgatcaaggtatgcgtgctacttaggtaaggatccagagggatattccctttctttgaacaaagaaggtggattaaaagatgtgattttc |
117 |
Q |
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| T |
44923800 |
gtaaccaccttgatcaaggtatgcgtgctacttaggtaaggatccagagggtaattccctttctttgaacaaagaaggtg--------------attttc |
44923885 |
T |
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| Q |
118 |
tatgttgcaactaccagcaagaaaatgaaacttatgtcctttctaacagacaccttagggagttgtggtaaacaaacagatggacttgtgttttgtggca |
217 |
Q |
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| T |
44923886 |
tatgttgcaactaccagcaagaaaatc--------------tctaacagacacctgagggagttgtggtaaacaaacagatggacttgtgttttgtggca |
44923971 |
T |
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| Q |
218 |
catgaacatgagcatttccaggataaacaaacatacaccacagatttgattgaactaatatttttatattaaggaaggaacttgagccggatttgagttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44923972 |
catgaacatgagcatttccaggataaacaaacatacaccacagatttgattgaactaatatttttatattaaggaaggaacttgtgccggatttgagttt |
44924071 |
T |
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| Q |
318 |
ctaccaacagtcccaggatactagaataa |
346 |
Q |
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| T |
44924072 |
ctaccaacagtcccaggatactagaataa |
44924100 |
T |
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