View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17741_low_6 (Length: 306)
Name: NF17741_low_6
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17741_low_6 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 39336073 - 39335784
Alignment:
| Q |
17 |
agtcaaggggatttttaggatccatgaaggaagaccgtatgcccatggagggnnnnnnnggtaccccctttgcttgtaaaaaacaggaagccttgaaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |
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| T |
39336073 |
agtcaaggggatttttaggatccatgaaggaagagaatatgcccatggagggaaaaaaaggcaccccctttgcttgtagaaaacaggaagccttgaaact |
39335974 |
T |
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| Q |
117 |
accatggaaagttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatgcaccactgaatctttccgca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39335973 |
accatggaaagttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatgcaccactgaatctttgcgca |
39335874 |
T |
|
| Q |
217 |
tttcagttcggaggaagacagtcgtggttatcattgccattgcagcgagctaaaacgagaaggaagtcatcagtaatggattttaacatt |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39335873 |
tttcagttcggaggaagacagtcatggttatcattgccattacagcgagctaaaacgagaaggaagtcatcagtaatggattttaacatt |
39335784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 39347338 - 39347054
Alignment:
| Q |
17 |
agtcaaggggatttttaggatccatgaaggaagaccgtatgcccatggagggnnnnnnnggtaccccctttgcttgtaaaaaacaggaagccttgaaact |
116 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||||| |||| |||||||||||||||| |
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| T |
39347338 |
agtcaaggggatttttaggatccacgaaggaagagaatatgcccatggagggaaaaaaaggcaccccctttgcttgtagaaaataggaagccttgaaact |
39347239 |
T |
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| Q |
117 |
accatggaaagttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatgcaccactgaatctttccgca |
216 |
Q |
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| T |
39347238 |
accatggaaagttcagccattccaataaacatgatcacaacgacgccaaagaacaacgcacctacatatatacctccatgcgccacagaatctttgcgca |
39347139 |
T |
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| Q |
217 |
tttcagttcggaggaagacagtcgtggttatcattgccattgcagcgagctaaaacgagaaggaagtcatcagtaatggatttta |
301 |
Q |
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|||| |||||||||||||| ||| ||| ||||||||||||| |||| |||||||| |||||||||||||||| | |||||||||| |
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| T |
39347138 |
tttctgttcggaggaagacggtcatggctatcattgccattacagcaagctaaaatgagaaggaagtcatcaatgatggatttta |
39347054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 39361905 - 39361629
Alignment:
| Q |
17 |
agtcaaggggatttttaggatccatgaaggaagaccgtatgcccatggagggnnnnnnnggtaccccctttgcttgtaaaaaacaggaagccttgaaact |
116 |
Q |
| |
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||||||||| ||||| |||||||| | ||||||| | ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
39361905 |
agtcaagggaattttaaggatccaagcaggaagagcatatgcccatggagggaaaaagaggtatcccctttgcttgtagaaaacaggaagccttgaaact |
39361806 |
T |
|
| Q |
117 |
accatggaaagttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatgcaccactgaatctttccgca |
216 |
Q |
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||||||||||||||||||| ||||||||||| ||| ||| || |||| ||||||||||||||||||||||| ||||||| ||||||||||| | ||| |
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| T |
39361805 |
accatggaaagttcagccactccaataaacaggattacaatacagccatagaacaatgcacctacatatatatctccatgagccactgaatctctgtgca |
39361706 |
T |
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| Q |
217 |
tttcagttcggaggaagacagtcgtggttatcattgccattgcagcgagctaaaacgagaaggaagtcatcagtaat |
293 |
Q |
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| T |
39361705 |
tctcagtccggaggaagatggtcatggcaatcattgccattatagcaagctaaaacgagagggaagtcatcagtaat |
39361629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 39566507 - 39566777
Alignment:
| Q |
27 |
atttttaggatccatgaaggaagaccgtatgcccatggagggnnnnnnnggtaccccctttgcttgtaaaaaacaggaagccttgaaactaccatggaaa |
126 |
Q |
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| T |
39566507 |
atttttaggatccatccaggaagagcatatgcccatgcagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccattgaaa |
39566606 |
T |
|
| Q |
127 |
gttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatgcaccactgaatctttccgcatttcagttcg |
226 |
Q |
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|||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| | |||||||||| || |
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| T |
39566607 |
gttcagccattccattgaacatgatcacaacaacgccatagaacaatgcacctacatatatacctccatgagtcactgaatctctgtgcatttcagtccg |
39566706 |
T |
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| Q |
227 |
gaggaagacagtcgtggttatcattgccattgcagcgagctaaaacgagaaggaagtcatcagtaatggat |
297 |
Q |
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|||||||| ||| ||| |||||||||||| |||| |||||||| |||| || ||||||||||||||||| |
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| T |
39566707 |
gaggaagagggtcatggcgatcattgccattacagctagctaaaaggagagggtagtcatcagtaatggat |
39566777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 39549572 - 39549853
Alignment:
| Q |
21 |
aaggggatttttaggatccatgaaggaagaccgtatgcccatggagggnnnnnnnggtaccccctttgcttgtaaaaaacaggaagccttgaaactacca |
120 |
Q |
| |
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|||||||||||||||||||||| ||||||| | ||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39549572 |
aaggggatttttaggatccatgcaggaagagcatatgcccatggagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactacca |
39549671 |
T |
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| Q |
121 |
tggaaagttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatgcaccactgaatctttccgcatttc |
220 |
Q |
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|||||| ||| ||||||||| | |||||||||||| ||||||| |||||||||||||||||||||| |||||| | ||| |||||| | |||| || |
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| T |
39549672 |
tggaaatttccgccattccattgaacatgatcacaacaacgccatagaacaatgcacctacatatatgcctccaagagtcaccgaatctctgtgcatctc |
39549771 |
T |
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| Q |
221 |
agttcggaggaagacagtcgtggttatcattgccattgcagcgagctaaaacgagaaggaagtcatcagtaatggattttaa |
302 |
Q |
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||| |||| ||||| ||| | | |||||||||||| | | |||||| |||| ||||||||||||||||||||||||| |
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| T |
39549772 |
agtccggaagaagatggtcattgcaatcattgccattatacatatctaaaaggagagggaagtcatcagtaatggattttaa |
39549853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 39540056 - 39540232
Alignment:
| Q |
20 |
caaggggatttttaggatccatgaaggaagaccgtatgcccatggagggnnnnnnnggtaccccctttgcttgtaaaaaacaggaagccttgaaactacc |
119 |
Q |
| |
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|||||||||||||||||||||| ||||||| | ||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
39540056 |
caaggggatttttaggatccattcaggaagagcatatgcccatggagggaagaagaggtatcccctttgcttgtagaaaacaggaagtcttgaaactacc |
39540155 |
T |
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| Q |
120 |
atggaaagttcagccattccaataaacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatg |
196 |
Q |
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||||||| ||||||||||||| | ||||||||| | ||| ||| |||| | ||||||||||||||| |||||||| |
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| T |
39540156 |
atggaaatttcagccattccattgaacatgatcgtaacaacaccatagaatattgcacctacatatatgcctccatg |
39540232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 39576510 - 39576547
Alignment:
| Q |
24 |
gggatttttaggatccatgaaggaagaccgtatgccca |
61 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
39576510 |
gggattttaaggatccatgaaggaagaccatatgccca |
39576547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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