View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17741_low_7 (Length: 306)
Name: NF17741_low_7
Description: NF17741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17741_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 1120024 - 1119737
Alignment:
| Q |
1 |
cattgcttattgaagttacatattagttaattttttcccttcaaattttgcactattattttaaaggaagtatgtttgttttgttggagcaaaggtttat |
100 |
Q |
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| T |
1120024 |
cattgcttattgaagttacatattagttaattttttcccttcaaattttgcactattattttaaaggaagtatgtttgttttgttggagcaaaggtttat |
1119925 |
T |
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| Q |
101 |
ttaaatcaatatgtaacaacaaatcatcctcaatttctaaggtaacaacagataatcctcaaatttctaatacaaaatgacattagtctctactcaacaa |
200 |
Q |
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| T |
1119924 |
ttaaatcaatatgtaacaacaaatcatcctcaatttctaaggtaacaacagataatcctcaaatttctaatacaaaatgacattagtctctactcaacaa |
1119825 |
T |
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| Q |
201 |
cagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagt |
288 |
Q |
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| T |
1119824 |
cagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagt |
1119737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 1113165 - 1113056
Alignment:
| Q |
175 |
aaatgacattagtctctactcaacaacagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgattt |
274 |
Q |
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| T |
1113165 |
aaatgacattagtctctactcaacaacagatctgatat----gctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgattt |
1113070 |
T |
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| Q |
275 |
acatttgctaaagt |
288 |
Q |
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| T |
1113069 |
acatttgctaaagt |
1113056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 39627222 - 39627276
Alignment:
| Q |
61 |
ttaaaggaagtatgtttgttttgttggagcaaaggtttatttaaatcaatatgta |
115 |
Q |
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||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39627222 |
ttaaaagaagtatgcttgttttgttgctgcaaaagtttatttaaatcaatatgta |
39627276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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