View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_high_10 (Length: 429)

Name: NF17742_high_10
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_high_10
NF17742_high_10
[»] chr6 (3 HSPs)
chr6 (1-423)||(34216645-34217075)
chr6 (138-193)||(31437549-31437604)
chr6 (246-280)||(14385448-14385482)
[»] chr3 (2 HSPs)
chr3 (145-374)||(21093356-21093584)
chr3 (322-373)||(14679836-14679887)
[»] chr7 (2 HSPs)
chr7 (68-240)||(11482726-11482906)
chr7 (293-374)||(11482902-11482983)
[»] chr4 (2 HSPs)
chr4 (245-348)||(19551447-19551550)
chr4 (246-281)||(3009039-3009074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (322-374)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (322-374)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (322-374)||(20380961-20381013)
chr2 (324-374)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (246-281)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (322-373)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (322-373)||(31435-31486)
[»] chr8 (2 HSPs)
chr8 (246-280)||(17271738-17271772)
chr8 (245-281)||(45270546-45270582)
[»] chr5 (1 HSPs)
chr5 (139-199)||(13644669-13644729)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 34217075 - 34216645
Alignment:
Q  1 cagaattggtcaggtagaatactcgaaaggattggcggaatgtcaaaatgctctctggggacgtctaaccttgaataagggcgacaagccataaatggag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34217075 cagaattggtcaggtagaatactcgaaaggattggcggaatgtcaaaatgctctctggggacgtctgaccttgaataagggcgacaagccataaatggag 34216976  T
Q  101 catgatttggttactaagcttggaaaagtatg--------tgaacaaatggaaaatggtaccgcttggcaggggctattacgattttcattttgagtcgg 192  Q
    ||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34216975 catgatttggttactaagcttggaaaagtatggaagactgtgaataaatggaaaatggtaccgcttggcatgggctattacgattttcattttgagtcgg 34216876  T
Q  193 cagaggacttacaaaaaatttggtcggctggtaccattgatttgaagccagatctccttcgtctctcccaatggacgaaggattttaattagtattcaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216875 cagaggacttacaaaaaatttggtcggctggtaccattgatttgaagccagatctccttcgtctctcccaatggacgaaggattttaattagtattcaca 34216776  T
Q  293 gaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaatatatctctgttgcaagaac 392  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34216775 gaagcagactcacgcttctatctggatccgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaatatgtctctgttgcaagaac 34216676  T
Q  393 agacactctcttctacaccacttgatgatgt 423  Q
    ||||||||||||||||||||||| |||||||    
T  34216675 agacactctcttctacaccacttaatgatgt 34216645  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 31437604 - 31437549
Alignment:
Q  138 aaatggaaaatggtaccgcttggcaggggctattacgattttcattttgagtcggc 193  Q
    ||||||||||||||  ||||||| ||||| ||||| ||||||||||||||||||||    
T  31437604 aaatggaaaatggtgtcgcttggaaggggatattatgattttcattttgagtcggc 31437549  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 14385482 - 14385448
Alignment:
Q  246 ctccttcgtctctcccaatggacgaaggattttaa 280  Q
    |||||||| ||||||||||||||||||||||||||    
T  14385482 ctccttcgcctctcccaatggacgaaggattttaa 14385448  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 374
Target Start/End: Original strand, 21093356 - 21093584
Alignment:
Q  145 aaatggtaccgcttggcaggggctattacgattttcattttgagtcggcagaggacttacaaaaaatttggtcggctggtaccattgatttgaagccaga 244  Q
    ||||||| |||||||| ||||| ||||| || || |||||||||||||| ||||||||||  || |||||||||||| |||| ||  |||| | |||||     
T  21093356 aaatggtgccgcttggaaggggttattatgactt-cattttgagtcggccgaggacttacggaatatttggtcggctagtactatcaatttaaggccagg 21093454  T
Q  245 tctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaa 344  Q
    |||||||||| |||||||||||   || || |||  | | ||||||||||| |||||||| ||||| || |||||| | ||||| || ||||| ||||||    
T  21093455 tctccttcgtttctcccaatggctaaaagacttttctcattattcacagaaccagactcatgcttccatttggatccgcttggtcgaattaccacaagaa 21093554  T
Q  345 tattggcgggaacaaacattgaaggaaata 374  Q
    |||| || |||||  || ||||||||||||    
T  21093555 tattagcaggaacgtactttgaaggaaata 21093584  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 14679887 - 14679836
Alignment:
Q  322 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 373  Q
    |||||||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  14679887 gtttggttgagttaccgcaagagtattggcgggaacgtacattgaaggaaat 14679836  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 11482726 - 11482906
Alignment:
Q  68 accttgaataagggcgacaagccataaatggagcatgatttggttactaagcttggaaaagtatg--------tgaacaaatggaaaatggtaccgcttg 159  Q
    ||||| ||||||||| |||||||||| || |  ||  ||| |||||||||||| |||||||||||        |||| ||||||||||||||||  |||     
T  11482726 accttaaataagggcaacaagccatacatagctcagaattcggttactaagctcggaaaagtatggaagactatgaataaatggaaaatggtactacttt 11482825  T
Q  160 gcaggggctattacgattttcattttgagtcggcagaggacttacaaaaaatttggtcggctggtaccattgatttgaagc 240  Q
    | ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||  |||||| | ||||||||||||    
T  11482826 gaaggggctattacgattttcatatttagtcggcagaggacttacgaaaaaattggtcaactggtatcgttgatttgaagc 11482906  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 11482902 - 11482983
Alignment:
Q  293 gaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 374  Q
    |||||||||||| ||||||||||| | | || ||||||| |||||||||||||||||| |||||||||||  ||||||||||    
T  11482902 gaagcagactcatgcttctatctgaacccgtatggttgaattaccgcaagaatattggtgggaacaaacaccgaaggaaata 11482983  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 19551447 - 19551550
Alignment:
Q  245 tctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaa 344  Q
    ||||||||||||||| |||| ||||||||| |||||| | |||||| ||||||| ||||||||||| || |||||  | |||||||| || || ||||||    
T  19551447 tctccttcgtctctcacaatagacgaaggactttaatcattattcatagaagcaaactcacgcttccatttggattcgcttggttgaattgccccaagaa 19551546  T
Q  345 tatt 348  Q
    ||||    
T  19551547 tatt 19551550  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 3009074 - 3009039
Alignment:
Q  246 ctccttcgtctctcccaatggacgaaggattttaat 281  Q
    |||||||| |||||||||||||||||||||||||||    
T  3009074 ctccttcgcctctcccaatggacgaaggattttaat 3009039  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 38085 - 38137
Alignment:
Q  322 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 374  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  38085 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 38137  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 160694 - 160642
Alignment:
Q  322 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 374  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  160694 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 160642  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 20380961 - 20381013
Alignment:
Q  322 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 374  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  20380961 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 20381013  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 25976689 - 25976639
Alignment:
Q  324 ttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 374  Q
    ||||| || ||||||||||| ||||||||||||| ||| ||||||||||||    
T  25976689 ttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaata 25976639  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 839 - 874
Alignment:
Q  246 ctccttcgtctctcccaatggacgaaggattttaat 281  Q
    |||||||| |||||||||||||||||||||||||||    
T  839 ctccttcgcctctcccaatggacgaaggattttaat 874  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 12090 - 12141
Alignment:
Q  322 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 373  Q
    |||||||||| ||||||||||| ||||||||||| |  ||||||||||||||    
T  12090 gtttggttgagttaccgcaagagtattggcgggagcgtacattgaaggaaat 12141  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 31486 - 31435
Alignment:
Q  322 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 373  Q
    |||||||||| ||||||||||| ||||||||||||   ||||||||||||||    
T  31486 gtttggttgagttaccgcaagagtattggcgggaatgtacattgaaggaaat 31435  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 17271738 - 17271772
Alignment:
Q  246 ctccttcgtctctcccaatggacgaaggattttaa 280  Q
    |||||||| ||||||||||||||||||||||||||    
T  17271738 ctccttcgcctctcccaatggacgaaggattttaa 17271772  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 45270582 - 45270546
Alignment:
Q  245 tctccttcgtctctcccaatggacgaaggattttaat 281  Q
    |||||||||||| || |||||||||||||||||||||    
T  45270582 tctccttcgtctttctcaatggacgaaggattttaat 45270546  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 13644729 - 13644669
Alignment:
Q  139 aatggaaaatggtaccgcttggcaggggctattacgattttcattttgagtcggcagagga 199  Q
    ||||||||||||| || ||||||| ||| ||||| || ||||||||||| ||||| |||||    
T  13644729 aatggaaaatggtgcctcttggcaaggggtattatgactttcattttgactcggcggagga 13644669  T

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