View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_12 (Length: 420)
Name: NF17742_high_12
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 36322593 - 36323000
Alignment:
| Q |
14 |
cattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322593 |
cattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattg |
36322692 |
T |
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| Q |
114 |
gaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcataattatattatgagcaatgttatttatcccgacacatgttgtccc |
213 |
Q |
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| T |
36322693 |
gaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcataattatattatgagcaatgctatttatcccgatacatgttgtccc |
36322792 |
T |
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| Q |
214 |
aaaattgccagcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataatttagggagatatcatgattattcg |
313 |
Q |
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| T |
36322793 |
aaaattgccagcgaaaatctatttttcaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataatttagggagatatcatgattattcg |
36322892 |
T |
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| Q |
314 |
gtgcatgttcacttgtgaaattattgggacaata-tttgtcgtgatacatagcaatttccttatattatatagagcatgtgacaaacgtttgacaccatt |
412 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36322893 |
gtgcatgttcacttgtgaaactattgggacaatattttgtcgtgatacatagcaatttccttatattatatagagcatgtgacaaatgtttgacaccatt |
36322992 |
T |
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| Q |
413 |
atattggt |
420 |
Q |
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| T |
36322993 |
atattggt |
36323000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 36329391 - 36329542
Alignment:
| Q |
14 |
cattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattg |
113 |
Q |
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| T |
36329391 |
cattatgaactagcagatgcagctaacatggtaaccaatttcatgggagttagtaacttgctctccattgtcgtcgccgttcttgctgattcattcattg |
36329490 |
T |
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| Q |
114 |
gaagacacaaatccgttcttatttctggctgctttgagtttttggtaagttt |
165 |
Q |
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| T |
36329491 |
gaagatataaaaccgttcttatttctggcttctttgagtgtttggtaagttt |
36329542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 5458315 - 5458463
Alignment:
| Q |
14 |
cattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattg |
113 |
Q |
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|||||| |||||| |||||| ||||||||| | ||||||| ||||| || ||||||| ||||| ||| | || || | |||||||||||||||||| |
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| T |
5458315 |
cattatcaactagaagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctattttggtggctatcgttgctgatacatggattg |
5458414 |
T |
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| Q |
114 |
gaagacacaaatccgttcttatttctggctgctttgagtttttggtaag |
162 |
Q |
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| T |
5458415 |
gtagatacaaatctgttttattttctggcttcttcgagtttttggtaag |
5458463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 17438909 - 17438840
Alignment:
| Q |
223 |
agcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
292 |
Q |
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| T |
17438909 |
agcgataatcaattgtccaattaaatttctttctggccacaaatcaagggaggtggtggggcataattta |
17438840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 11168178 - 11168124
Alignment:
| Q |
238 |
tccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
292 |
Q |
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| T |
11168178 |
tccaatcaaatttctttctgaccacaaatcaagggaggtggtggggcatatttta |
11168124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 24606063 - 24605997
Alignment:
| Q |
184 |
aatgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttc |
251 |
Q |
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| T |
24606063 |
aatgctatttatcccaatacatgttgtcccaaa-ttgctagtgaaaatccattttctaatcaaatttc |
24605997 |
T |
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