View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_15 (Length: 409)
Name: NF17742_high_15
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 36373507 - 36373899
Alignment:
| Q |
15 |
atcatgtgatgaagaaggtggttataatgtttcttcgggacatgttaataatttctgcacaaagaagcttaagagaaggcggttgtgtaaggagcatatg |
114 |
Q |
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| T |
36373507 |
atcatgtgatgaagaaggtggttataatgtttcttcgggacatgttaataatttctgcacaaagaagtttaagagaaggcggttgtgtaaggagcttatg |
36373606 |
T |
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| Q |
115 |
cgtttaataactttatgggaagctatacaatccaaagaaggtgttcaaaggaaaacgacaaacagtatcgatgatcatgaagaacaggatcataaagacg |
214 |
Q |
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| T |
36373607 |
gatttgataactttatgggaagcgatacaatccaaagaaggtgttcaaaagaaaacgacaaacagtatcgatgatcatgaagaacaggatcataaaggcg |
36373706 |
T |
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| Q |
215 |
gtagaacgttaaatgctgatgcctgtgaggaattaatcgatgcttacatggataattttgatagcctaccaactgaagaagatccaactatcagtgaaga |
314 |
Q |
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| T |
36373707 |
gtagaatgttaaatgctgatgcctgtgaggaagtaatcgatgcttacatggataattttgatagcctaccaactgaagaagatccaactatcagtgaaga |
36373806 |
T |
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| Q |
315 |
aagacagtttgagcaggagaaagaaaacgtattggaaagcggtgatgaggtagaaaatcctgatgatttggctaacatatgggaagaaatgga |
407 |
Q |
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| T |
36373807 |
aagacagtttgagcaggagaaagaaaacgtatcggaaaaaggtgatgaggtagaaaatcctgatgatttggccgacatgtgggaagaaatgga |
36373899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 32251813 - 32251706
Alignment:
| Q |
189 |
tcatgaagaacaggatcataaagacggtagaacgttaaatgctgatgcctgtgaggaattaatcgatgcttacatggataattttgatagcctaccaact |
288 |
Q |
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|||||||||||| |||||||||| ||||||||| || |||||||||||| | ||||| |||| ||| ||||||| | ||||| ||||| ||||||||| |
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| T |
32251813 |
tcatgaagaacaagatcataaaggcggtagaacattcaatgctgatgcccgcaaggaaataatagatagttacatgaagaatttcgatagtctaccaact |
32251714 |
T |
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| Q |
289 |
gaagaaga |
296 |
Q |
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|||||||| |
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| T |
32251713 |
gaagaaga |
32251706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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