View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_17 (Length: 400)
Name: NF17742_high_17
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 36734059 - 36733674
Alignment:
| Q |
11 |
catcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaaggaagaagttgactcaatgtgttacc |
110 |
Q |
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| T |
36734059 |
catcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaaggaagaagttgactcaatgtgttacc |
36733960 |
T |
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| Q |
111 |
accaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccatatgttagataatcaaca |
210 |
Q |
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| T |
36733959 |
accaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccatatgttagataatcaaca |
36733860 |
T |
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| Q |
211 |
gctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaaccta |
310 |
Q |
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| T |
36733859 |
gctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaaccta |
36733760 |
T |
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| Q |
311 |
ggaaaaggtgtattataggtccatattttgttgaaagtttatgaagtccttggtgaggtattgaaccaataaggtgatgatgtcca |
396 |
Q |
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| T |
36733759 |
ggaaaaggtgtattataggtccatattttgttgaaagtttgtgaagtccttggtgaggtattgaaccaataaggtgaagatgtcca |
36733674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 25168224 - 25168110
Alignment:
| Q |
241 |
gtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttg |
340 |
Q |
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| T |
25168224 |
gtttcgtgagttttaagaaactctttggctatttctggatttgaagttactatacaaggtatagagcctaggaaaagttgaattatgggtccatattgaa |
25168125 |
T |
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| Q |
341 |
ttgaaagtttatgaa |
355 |
Q |
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||||||| ||||||| |
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| T |
25168124 |
ttgaaagcttatgaa |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 24939620 - 24939511
Alignment:
| Q |
226 |
cggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtatta |
325 |
Q |
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||||||||||| | |||||||||||||||||||||||||| || || ||| | |||| ||| | |||||| | ||| ||||||||||| || |||| |
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| T |
24939620 |
cggttggagaaggaagtttcgtgagttttaagaaactctttggctatttttggacttgaagttactatacaaggaacggagcctaggaaaagttgcatta |
24939521 |
T |
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| Q |
326 |
taggtccata |
335 |
Q |
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| |||||||| |
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| T |
24939520 |
tgggtccata |
24939511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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