View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_22 (Length: 308)
Name: NF17742_high_22
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 26418312 - 26418613
Alignment:
| Q |
1 |
ataggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactggtacctaacctgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26418312 |
ataggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactggtacctaacttgta |
26418411 |
T |
|
| Q |
101 |
cccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggctactgaccctttagcacgcattacaaattccactaaccatataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| || |
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| T |
26418412 |
cccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggccactgaccctttagcatgcattacaaattccagtaaccatatcaa |
26418511 |
T |
|
| Q |
201 |
acctatgaaacact-acacagacacaacactgacatatcgacactgataataatttattttaagcaatggaataattgaatgcaatcacatgtgttggtc |
299 |
Q |
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||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
26418512 |
accaatgaaacactgacacagacacaacac-------tcgacactgataataatttattttaagaaatgggataattgaatgcaatcacacgtgttggtc |
26418604 |
T |
|
| Q |
300 |
tcagacatt |
308 |
Q |
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||||||||| |
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| T |
26418605 |
tcagacatt |
26418613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 306
Target Start/End: Complemental strand, 27981917 - 27981599
Alignment:
| Q |
3 |
aggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactg---gtacctaacctgt |
99 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||| ||||||||| ||| |
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| T |
27981917 |
aggagaccaaccaaacctccttagaccttcacagtcac------cacctccatcatccttcactgacaaacaaaacaaccaccaccagtacctaacttgt |
27981824 |
T |
|
| Q |
100 |
acccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggctactgaccctttagcacgcattacaaattccactaaccatataa |
199 |
Q |
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||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| |||| |||||||||||| ||||| ||| |||||||||||||| | |
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| T |
27981823 |
acccatcctcttgaaaccaacacctcttgttcatcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccactaaccatatca |
27981724 |
T |
|
| Q |
200 |
aacc---tatgaa------acact-aca-cagacacaacactgacatatcg-------acactgataataatttattttaagcaatggaataattgaatg |
281 |
Q |
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|||| |||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||| ||||||| |
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| T |
27981723 |
aacctattatgaacctatgacactgacaccagacacaacactgacatatcgatactcaacactgataataatttatttgaagaaatgggatagttgaatg |
27981624 |
T |
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| Q |
282 |
caatcacatgtgttggtctcagaca |
306 |
Q |
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| T |
27981623 |
caatcacatgtgtcggtctcagaca |
27981599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 306
Target Start/End: Complemental strand, 28068447 - 28068129
Alignment:
| Q |
3 |
aggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactg---gtacctaacctgt |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||| ||||||||| ||| |
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| T |
28068447 |
aggagaccaaccaaacctccttagaccttcacagtcac------cacctccatcatccttcactgacaaacaaaacaaccaccaccagtacctaacttgt |
28068354 |
T |
|
| Q |
100 |
acccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggctactgaccctttagcacgcattacaaattccactaaccatataa |
199 |
Q |
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||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| |||| |||||||||||| ||||| ||| |||||||||||||| | |
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| T |
28068353 |
acccatcctcttgaaaccaacacctcttgttcatcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccactaaccatatca |
28068254 |
T |
|
| Q |
200 |
aacc---tatgaa------acact-aca-cagacacaacactgacatatcg-------acactgataataatttattttaagcaatggaataattgaatg |
281 |
Q |
| |
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|||| |||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||| ||||||| |
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| T |
28068253 |
aacctattatgaacctatgacactgacaccagacacaacactgacatatcgatactcaacactgataataatttatttgaagaaatgggatagttgaatg |
28068154 |
T |
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| Q |
282 |
caatcacatgtgttggtctcagaca |
306 |
Q |
| |
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||||||||||||| ||||||||||| |
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| T |
28068153 |
caatcacatgtgtcggtctcagaca |
28068129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 1745187 - 1745228
Alignment:
| Q |
265 |
aatggaataattgaatgcaatcacatgtgttggtctcagaca |
306 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
1745187 |
aatggcataattgaatggaatcacatgtgttggtgtcagaca |
1745228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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