View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_26 (Length: 291)
Name: NF17742_high_26
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_26 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 30941758 - 30942048
Alignment:
| Q |
1 |
cacacacaagaaaatgtctactagtggtagcaattttcatggcaagaatttggagcaagaaacatcatcaacaaccatttcagtagcgacacttagtcgc |
100 |
Q |
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| T |
30941758 |
cacacacaagaaaatgtctactagtggtagcaattttcatggcaagaatttggagcaagaaacatcatcaacaaccatttcagtagcgacacttagtcgc |
30941857 |
T |
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| Q |
101 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagcaaccatgttt |
200 |
Q |
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| T |
30941858 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagcaaccatgttt |
30941957 |
T |
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| Q |
201 |
tggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacc |
291 |
Q |
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| T |
30941958 |
tggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacc |
30942048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
101 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
145 |
Q |
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| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 39556357 - 39556559
Alignment:
| Q |
89 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
188 |
Q |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
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| Q |
189 |
gcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgc |
288 |
Q |
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| T |
39556457 |
ccaaccatgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgtatgttttatggacagccagagccaccagc |
39556556 |
T |
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| Q |
289 |
acc |
291 |
Q |
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||| |
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| T |
39556557 |
acc |
39556559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 287
Target Start/End: Complemental strand, 32002397 - 32002202
Alignment:
| Q |
92 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagca |
191 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||| ||| | || ||| | |
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| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
32002298 |
T |
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| Q |
192 |
accatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctg |
287 |
Q |
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| T |
32002297 |
accatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctg |
32002202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 4863129 - 4863169
Alignment:
| Q |
206 |
ttccttcgttacttagaccaatttggaaaaactaaggttca |
246 |
Q |
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| T |
4863129 |
ttccttcgttacttagatcaatttggaaagactaaggttca |
4863169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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