View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_3 (Length: 517)
Name: NF17742_high_3
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 499
Target Start/End: Complemental strand, 14433757 - 14433270
Alignment:
| Q |
12 |
tcatcatttagttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcct |
111 |
Q |
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| T |
14433757 |
tcatcatttagttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgttcgctttgtctcct |
14433658 |
T |
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| Q |
112 |
ttagatgtccctgatcaccctatcaatgttgtttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaa |
211 |
Q |
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| T |
14433657 |
ttagatgtccctgatcaccctatcaatgttatttctcctactccttattactcggtgatctttctttcttataaacaaaatggtctcgtatacagactaa |
14433558 |
T |
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| Q |
212 |
aaatgtctcgtatattaaaatatgttttaggtctcatctacaagtaaaatttattgggccgaccatgcaaggaaggttaactaacaatgtgtttaatttt |
311 |
Q |
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| T |
14433557 |
aaatgtctcgtatattaaaatatgttttaggtctcacctacaaataaaatttactgggccgaccatgcaaggaaggttaactaacaatgcgtttaatttt |
14433458 |
T |
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| Q |
312 |
attttgtaggaatacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttacatag |
411 |
Q |
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| T |
14433457 |
attttgtaggaatacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatgctgctgtgtatgataaaaatgaatcttacatag |
14433358 |
T |
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| Q |
412 |
aggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
499 |
Q |
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| T |
14433357 |
aggtggtgacttccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaaagggaaattgattcatgactt |
14433270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 309 - 469
Target Start/End: Complemental strand, 14441791 - 14441631
Alignment:
| Q |
309 |
tttattttgtaggaatacaaaaatgcaattaat-atattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttac |
407 |
Q |
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| T |
14441791 |
tttattttgtaggaataccaagatgtgattgatcata-tgcaatcaaggctatttcaatggggtggtgatgctgctttgtatgatgaaaacaaaccttac |
14441693 |
T |
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| Q |
408 |
atagaggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactc |
469 |
Q |
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| T |
14441692 |
atagaggtagtgacctccccaaacaaccctgatgggactcttcgaacaccagtggtgaactc |
14441631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 14443164 - 14443011
Alignment:
| Q |
22 |
gttggaaatgctgtgaccaaagataaatacatagttgttggaaatggctcttctcaactcttccaagctgctttgtttgctttgtctcctttagatgtcc |
121 |
Q |
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| T |
14443164 |
gttggtaatgttgtcacaaaagataagttcatagtgttaggaaatggctctactcaacttttcaatgctcttttgtatgcactctctccttcagatccct |
14443065 |
T |
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| Q |
122 |
ctgatcaccctatcaatgttgtttctcctactccttattactcggtgatctttc |
175 |
Q |
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| T |
14443064 |
ctgatcaacctatcaatgttgttgctgctgctccttattactcggtaatctttc |
14443011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 32598443 - 32598355
Alignment:
| Q |
180 |
ttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatattaaaatatgttttaggtctcatctacaagtaaaatttattgg |
268 |
Q |
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| T |
32598443 |
ttataaacaaaaaggcttcatatatagactaaaaatgcctcatatattaaaatttgttttagacctcttctacaaataaaatttattgg |
32598355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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