View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_high_9 (Length: 431)
Name: NF17742_high_9
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 30400892 - 30400487
Alignment:
| Q |
20 |
ggagactgtagaagaaaagaaattacagatttagtaacattattgcaatcatataaatgaactacannnnnnncctaagtacattcttgtgaaataaggt |
119 |
Q |
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| T |
30400892 |
ggagactatagaagaaaagaaattacagatttagtaacattattgcaatcatataaatgaactacatttttttcctaagtacattctcgtgaaataaggt |
30400793 |
T |
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| Q |
120 |
aacttttttgcgttggctgaactaacggtcttcttacctaaatccaagatttattctcaataattaaaagtatatgaattgtatagagacgagaatgtaa |
219 |
Q |
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| T |
30400792 |
aacttttttgcgttggctgaactaacggtcttcttacctaaatccaagatttattctcaataattaaaagtatatgaattgtatagagacaagaatgtaa |
30400693 |
T |
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| Q |
220 |
caacagattaccccctcaaaaatttaaaacaaatttccataccaagtagcaaaatttattcacaaacatacagaagattggtcattaattaagaaatgaa |
319 |
Q |
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| T |
30400692 |
caacagattaccccctcaaaaatttaaaacaaatttccataccaagtagcaaaatttattcacaaacatacacaagattggtcattaattaagaaatgaa |
30400593 |
T |
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| Q |
320 |
aatgtgaataacagtgttatttattaccgttatatgaatgactcttcctctcagttttgacccttgagctaatgcagccacccatgccagtgtgttattg |
419 |
Q |
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| T |
30400592 |
aatgtgaataacagtgttatttattaccgttatatgaatgactcttcctctcagttttgacccttgagctaatgcagccatccatgccagtgtgttattg |
30400493 |
T |
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| Q |
420 |
atgatg |
425 |
Q |
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| T |
30400492 |
atgatg |
30400487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 30388344 - 30388308
Alignment:
| Q |
307 |
attaagaaatgaaaatgtgaataacagtgttatttat |
343 |
Q |
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| T |
30388344 |
attaagaaaggaaaatgtgaataacaatgttatttat |
30388308 |
T |
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