View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_10 (Length: 494)
Name: NF17742_low_10
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Original strand, 17591282 - 17591741
Alignment:
| Q |
11 |
catcaaacagaataattttaacatcttcaggcatcaccagagggcggtatccgttagctgcaataatttggacaatgcagaattaaaacagttgcaagcg |
110 |
Q |
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| T |
17591282 |
catcaaacagaataattttaacatcttcaggcatcaccagagggcggtatccgatagctgcaataatttggacgatgcagaattaaaacagttgcaagcg |
17591381 |
T |
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| Q |
111 |
tgacgaaggttaatgcgcgcaatgatacgtctccacgtcaaacttcctagtcatccagaagcaccagactattgcaaaccgttttccaaatcttcaaact |
210 |
Q |
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| T |
17591382 |
tgacgaaggttaatgcgcgcaatgatacgtctccacgtcaaacttcgtagtcatccacaagcaccagactattgcaaaccgttttccaaatcttcaaact |
17591481 |
T |
|
| Q |
211 |
caaggagcatatagaaaaaacatatggctaacattcccgttgtgtcgaaagcaaaacacgcaacacctattacgaggggatatgagaacacctttacaac |
310 |
Q |
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| T |
17591482 |
caaggagcatatagaaaaaacatatggctaacattctcgttgtgtcgaaagcaaaacacgcaacacctattacgaggggatatgagaacacctttacaac |
17591581 |
T |
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| Q |
311 |
acgcagacatgaactcaacggacatctgatctgcagtctcaaattcctctacaaacaaatggtaacagcttctaacagagaagcctttggatcaatacta |
410 |
Q |
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| T |
17591582 |
acgcagacatgaactcaacggacatctgatctgcagtctcaaattcctctacaaacaaatggtaacagcttctaacagagaagcctttggatcaatac-- |
17591679 |
T |
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| Q |
411 |
atttctctcttgcaggctttataatttcactaattttgacttcgatgtaccttattccatactcttt |
477 |
Q |
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| T |
17591680 |
-tttctctcttgcaggctttataatttcactatttttgact----tgtaccttattccatactcttt |
17591741 |
T |
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