View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_12 (Length: 487)
Name: NF17742_low_12
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 45709123 - 45709574
Alignment:
| Q |
20 |
ttataggaagaggaggcacagaatacttaccatacagacaaggcatcaacagcaacagtcgcattctccaactggccagtcataagtagcagtatcctgt |
119 |
Q |
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| T |
45709123 |
ttataggaagaggaggcacagaatacttaccatacagacaaggcatcaacagcaacagtcgcattctccaactggccagtcataagtagcagtatcctgt |
45709222 |
T |
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| Q |
120 |
aataccagttctctaaactgcacaaatcactaacataagtaggagtatattacttgcacaccaaggttttcctttcaagaaatacaaatttaattttgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45709223 |
aataccagttctctaaactgcacaaatcactaacataagtaggagtatattacttgcacaccaaggttttcctttcaagaaatataaatttaattttgtg |
45709322 |
T |
|
| Q |
220 |
tcacatcacatcacatgcacgtacgtgatttaggctctagacattaacttaatatgatcatgtattaagag----atagagattgtcataacgtaccata |
315 |
Q |
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| T |
45709323 |
-----tcacatcacatgcacgtacgtgatttaggctctagacattaacttaatatgatcatgtattaagagatatatagagattgtcataacgtaccata |
45709417 |
T |
|
| Q |
316 |
gcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaaggacacccaccacaaac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709418 |
gcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaaggacacccaccacaaac |
45709517 |
T |
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| Q |
416 |
agtataagccaacatcccaaaaaccaaaatccaccaagaaacatccaaagcaatagc |
472 |
Q |
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| T |
45709518 |
agtataagccaacatcccaaaaaccaaaatccaccaagaaacatccaaagcaatagc |
45709574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 45718883 - 45718959
Alignment:
| Q |
315 |
agcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtcca |
391 |
Q |
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| T |
45718883 |
agcatgacaccagaagccaaagatagtttaaagaaatcccataaaccaacaaaagcttcaactgaaaaaccattcca |
45718959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 418
Target Start/End: Complemental strand, 14092707 - 14092598
Alignment:
| Q |
309 |
taccatagcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaaggacacccac |
408 |
Q |
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|||||||||||||| ||||||||| ||| ||||| | || |||||||| |||||||| || || || ||||| ||| ||||||| |||||||| |||| |
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| T |
14092707 |
taccatagcataacaccagaagcagcagaaagtttaacaaattcccaaagcccagaaaaagcctccatagaaaacccattccaagtcaaaggacaaccac |
14092608 |
T |
|
| Q |
409 |
cacaaacagt |
418 |
Q |
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|| ||||||| |
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| T |
14092607 |
cataaacagt |
14092598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 14104369 - 14104269
Alignment:
| Q |
308 |
gtaccatagcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaaggacaccca |
407 |
Q |
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|||||| |||||||| ||||||||| ||||||||| || ||||||||| || | || || || || |||||||||||||||||||| ||||| ||| |
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| T |
14104369 |
gtaccagagcataaccccagaagcagcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaacca |
14104270 |
T |
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| Q |
408 |
c |
408 |
Q |
| |
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| |
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| T |
14104269 |
c |
14104269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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