View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_13 (Length: 486)
Name: NF17742_low_13
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_13 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 3725 - 4164
Alignment:
| Q |
19 |
gtgaaaaggagcaatctgtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagt |
118 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3725 |
gtgaaaagaaggaatctgtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagt |
3824 |
T |
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| Q |
119 |
tatttgttagttatagtttttacttatttcgtggtaggatatgcaaatgtttaatgaagtataaaactactattgttgcagttcaataatggtttcattt |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825 |
tatttgtta----tagtttttacttatttcgtggtaggatatgcaagtgtttaatgaagtataaaactactattgttgcagttcaataatggtttcattt |
3920 |
T |
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| Q |
219 |
atttatatcttcacttcagggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgccagtgagaaggaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3921 |
atttatatcttcacttcagggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgctagtgagaaggaa |
4020 |
T |
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| Q |
319 |
aaccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4021 |
aaccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaagaaagcaaaaaagatggctg |
4120 |
T |
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| Q |
419 |
gtgtgtcacaatcacttcccaaggatgaagcaactgatggtcag |
462 |
Q |
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| T |
4121 |
gtgtgtcacaatcacttcccaaggatgaatcaactgatggtcag |
4164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 21447811 - 21447372
Alignment:
| Q |
19 |
gtgaaaaggagcaatctgtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagt |
118 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447811 |
gtgaaaagaaggaatctgtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagt |
21447712 |
T |
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| Q |
119 |
tatttgttagttatagtttttacttatttcgtggtaggatatgcaaatgtttaatgaagtataaaactactattgttgcagttcaataatggtttcattt |
218 |
Q |
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| T |
21447711 |
tatttgtta----tagtttttacttatttcgtggtaggatatgcaagtgtttaatgaagtataaaactactattgttgcagttcaataatggtttcattt |
21447616 |
T |
|
| Q |
219 |
atttatatcttcacttcagggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgccagtgagaaggaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21447615 |
atttatatcttcacttcagggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgctagtgagaaggaa |
21447516 |
T |
|
| Q |
319 |
aaccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21447515 |
aaccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaagaaagcaaaaaagatggctg |
21447416 |
T |
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| Q |
419 |
gtgtgtcacaatcacttcccaaggatgaagcaactgatggtcag |
462 |
Q |
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| T |
21447415 |
gtgtgtcacaatcacttcccaaggatgaatcaactgatggtcag |
21447372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 218 - 461
Target Start/End: Original strand, 40685001 - 40685244
Alignment:
| Q |
218 |
tatttatatcttcacttcagggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgccagtgagaagga |
317 |
Q |
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|||||||||||| ||||||||| || | |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| | ||| ||||| |
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| T |
40685001 |
tatttatatctttacttcagggaagtcggctgggaatcacaacagttgtatcaactgattccattaggcacatgatgagaggttttgctaatgaaaagga |
40685100 |
T |
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| Q |
318 |
aaaccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggct |
417 |
Q |
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| T |
40685101 |
aaaccccttgttatgggcctctacctaccatgcaggcgagtgcttggatcctgttgctgttgcagaagcaaaggcaaaaaggagagcgaaaaagatggct |
40685200 |
T |
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| Q |
418 |
ggtgtgtcacaatcacttcccaaggatgaagcaactgatggtca |
461 |
Q |
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| T |
40685201 |
ggtgtatcacagtcactacctaaggatgaagtaactgaaggtca |
40685244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 40684779 - 40684848
Alignment:
| Q |
31 |
aatctgtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtata |
100 |
Q |
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|||||||||||||||| || ||||| ||||| || ||||| ||||| || ||||||||| | |||||||| |
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| T |
40684779 |
aatctgtgacagtgcttttgtgtggaactagtggttgtgggaaatccacattgtctgcattgctggtata |
40684848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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