View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_14 (Length: 463)
Name: NF17742_low_14
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 5774733 - 5774304
Alignment:
| Q |
18 |
ttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatcaaatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
5774733 |
ttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttcaggtaattcatca----atcgatcaatcaatcaaatt |
5774638 |
T |
|
| Q |
118 |
ctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgcca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774637 |
ctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgcca |
5774538 |
T |
|
| Q |
218 |
gaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnnttgtggaaatttt |
317 |
Q |
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| T |
5774537 |
gaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaatttt |
5774438 |
T |
|
| Q |
318 |
gtgttatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtgcttca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5774437 |
gtgttatttagaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacacacacatgtgcttca |
5774342 |
T |
|
| Q |
418 |
tctctgatttttcacctttcttctttccatgatgatgt |
455 |
Q |
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| T |
5774341 |
tctctgatttttaacctttcttctttccatgatgatgt |
5774304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 5768429 - 5768189
Alignment:
| Q |
51 |
tcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatcaaattctgtggtggttgtttatggttgaggtaactgtt |
150 |
Q |
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| T |
5768429 |
tcgactccaaatttcatttggaagtttttcaggtaattcatca----atccatcaatcaatcaaattttgtggtggttgttaatggttgaggtaaccgtt |
5768334 |
T |
|
| Q |
151 |
gttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaa |
250 |
Q |
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| T |
5768333 |
gttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaa |
5768234 |
T |
|
| Q |
251 |
accgtacttgagagatacactgttaaagaaactcaggtcagttat |
295 |
Q |
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||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
5768233 |
accttactcgagagatacaccgttaaagaaactcaggtcagttat |
5768189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
171 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
270 |
Q |
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||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
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| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
271 |
tgttaaagaaactcaggtcagt |
292 |
Q |
| |
|
||| || ||||||||||||||| |
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|
| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 5768171 - 5768137
Alignment:
| Q |
316 |
ttgtgttatttagaatgtaactaatcgaatgagta |
350 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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|
| T |
5768171 |
ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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