View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_16 (Length: 454)
Name: NF17742_low_16
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Complemental strand, 37136965 - 37136537
Alignment:
| Q |
20 |
aaagtccactattttttccatcatgtgataatggtgcaacttcatagtaatcattaaccatgcttgaatttcccataaaattaccatcaactccactagc |
119 |
Q |
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| T |
37136965 |
aaagtccactattttttccatcatgtgataatggtgcaacttcatagtaatcattaaccatgcttgaatttcccataaaattaccatcaacgccactagc |
37136866 |
T |
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| Q |
120 |
ataagatgaagcaggagtttcagaatcatacagagatcctgcattgaatccatgatgttcaaagctcaaattttcagagtattggtaatcatgtgaatca |
219 |
Q |
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| T |
37136865 |
ataagatgaagcaggagttttagaatcatacagagatcctgcattgaatccatgatgttcaaagctcaaattttcagagtattggtaatcatgtgaatca |
37136766 |
T |
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| Q |
220 |
cttggaggagtaaaattctggttgaaaagatttg---atgaagatggataaggtgaaagtgaaggtgatttttgcaaagcaagagtttcattaatctcaa |
316 |
Q |
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| T |
37136765 |
cttggaggagtaaaattctggttgaaaagatttgatgatgaagatggataaggtgaaagtgaaggtgatttttgcaaagcaagagtttcattaatctcaa |
37136666 |
T |
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| Q |
317 |
tgttttcatcattggaaaagttgaattgtggacatggatcggtgttgtgattattagcagaaccagagttgttctctagaagattataatcataatggtt |
416 |
Q |
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| T |
37136665 |
tgttttcatcattggaaaagttgaattgtggacatggattggtgttgtgattgttagcagaaccagagttgttctctagaagattataatcataatggtt |
37136566 |
T |
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| Q |
417 |
tggatcatcaatcttcttagtgtaacaag |
445 |
Q |
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| T |
37136565 |
tggatcatcaatcttcttagggtaacaag |
37136537 |
T |
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