View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_low_18 (Length: 443)

Name: NF17742_low_18
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_low_18
NF17742_low_18
[»] chr5 (1 HSPs)
chr5 (2-443)||(43408086-43408527)


Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 2 - 443
Target Start/End: Original strand, 43408086 - 43408527
Alignment:
Q  2 tcatcatcaaatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408086 tcatcatcaaatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggca 43408185  T
Q  102 aatccaggtccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcaga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408186 aatccaggtccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcaga 43408285  T
Q  202 tatgggtacctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408286 tatgggtacctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacat 43408385  T
Q  302 gaacgttcatgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatggatctcttctagcacttccagtttttgagagagga 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408386 gaacgttcatgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatggatctcttctagcacttccagtttttgagagagga 43408485  T
Q  402 agtgggacatgccttggtgttattgagtttgttatctccaat 443  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43408486 agtgggacatgccttggtgttattgagtttgttatctccaat 43408527  T

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