View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_19 (Length: 441)
Name: NF17742_low_19
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 32375976 - 32376151
Alignment:
| Q |
9 |
atcatcagttctggtaaaaatctactgtaattgtatggttctttaagtagtttcatacttaatccatttattattaggttaaatcatttacttgaggcct |
108 |
Q |
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| T |
32375976 |
atcattagttctggtaaaaatctactgtaattgtatggttccttaagtagtttcatacttaatccatttattataaggttaaatcatttacttgaggcct |
32376075 |
T |
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| Q |
109 |
cctctgccaagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
184 |
Q |
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| T |
32376076 |
cctctgccaagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
32376151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 131 - 430
Target Start/End: Original strand, 32364347 - 32364629
Alignment:
| Q |
131 |
cagcaagtaaattatggttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
230 |
Q |
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| T |
32364347 |
cagcaggtaaattttagttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
32364446 |
T |
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| Q |
231 |
acggatttataagctgtttttaacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctac |
330 |
Q |
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| T |
32364447 |
acggatttataaactgtttttaacatatttatacaaatcatttaggacaaattatgaaaatagtgtt------acaggtcacaac-cataatatatcaac |
32364539 |
T |
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| Q |
331 |
cctcaaagagtttcagtagaagaaacatattttaagattgtaaaactaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
430 |
Q |
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| T |
32364540 |
tctcaaagagtttcagtagaaggaacatacattaagattgtaaaactaagtt----------attctaacatgtatttcatatgattttcttgtaaaaag |
32364629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 251 - 430
Target Start/End: Original strand, 32376147 - 32376330
Alignment:
| Q |
251 |
taacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctaccctcaaagagtttcagtaga |
350 |
Q |
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| T |
32376147 |
taacatatttgtataaatcatgtagggcaaataatgaaaatagtgttacattcacaggtcacaacatttaatatatctaccctcaaagagtttcagtaga |
32376246 |
T |
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| Q |
351 |
agaaacatattttaagattgtaaaac----taagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
430 |
Q |
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| T |
32376247 |
aggaacatattttaagattgtaaaactaattaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
32376330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 32364244 - 32364303
Alignment:
| Q |
16 |
gttctggtaaaaatctactgtaattgtat--ggttctttaagtagtttcatacttaatcc |
73 |
Q |
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| T |
32364244 |
gttctggtaaatatctaccgtaattgtatatggttccataagtagtttcatacttaatcc |
32364303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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