View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17742_low_2 (Length: 796)
Name: NF17742_low_2
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 251 - 781
Target Start/End: Complemental strand, 24716638 - 24716105
Alignment:
| Q |
251 |
attacacatttttcgatcatttctgaatcaaatctcacacaccgaa---aaatgaacaacttattcaccggttcattttctcgcttccgtagcgaagaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716638 |
attacacatttttcgatcatttctgaatcaaatctcacacactgaagaaaaatgaacaacttattcaccggttcattttctcgcttccgtagcgaagaag |
24716539 |
T |
|
| Q |
348 |
tttcaccggaccggcaccacgtcatcgagatggcagacggtgccggatccagaaccggagcaggagctggaggtagaataaacctcgacaaattcttcga |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
24716538 |
tttcaccggaccggcaccacgtcatcgagatgacagacggtgccggaaccagaaccggagcaggagcaggaggtagaataaaccttgacaaattcttcga |
24716439 |
T |
|
| Q |
448 |
cgatgtcgaaggagtaaaagatgatctaaaagagctagaatcaatccaccaacgactttcaaagactaacgaacagacgaaaacggttcacgatgctaaa |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716438 |
cgatgtcgaaggagtaaaagatgatctaaaagagctagaatcaatccaccaacgactttcaaagactaacgaacagacgaaaacggttcacgatgctaaa |
24716339 |
T |
|
| Q |
548 |
ggagtgaaggagcttcgttcacgtatggacgaagaagtttctgcggcgttgaaaaaggcgaagatggtgaagctgaagttagaggcgttggaaagatcta |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24716338 |
ggagtgaaggagcttcgttcacgtatggacgaagaagtttctgcggcgttgaaaaaggcgaagatggtgaagctgaagttagagaagttggaaagatcta |
24716239 |
T |
|
| Q |
648 |
atgcagcgaaccggaatttggaagggtgtggaccgggttcgtcgtcggaccggacgaggagttcggtggtgaatggattgaagaagaagttgaaggattc |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716238 |
atgcagcgaaccggaatttggaagggtgtggaccgggttcatcgtcggaccggacgaggagttcggtggtgaatggattgaagaagaagttgaaggattc |
24716139 |
T |
|
| Q |
748 |
tatggagagttttaatcgtttgcgtgaagttatt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
24716138 |
tatggagagttttaatcgtttgcgtgaagttatt |
24716105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 24716870 - 24716666
Alignment:
| Q |
27 |
acagcacaatcaaaactacaaatcagtaaaatcattaatcagaccaatcaacgcgcttctgtccttcaatgtttgaaccaatccgaagtttcttgtttta |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716870 |
acagcacaatcaaaactacaaatcagtaaaatcattaatcagaccaatcaacgcgcttctgtccttcaatgtttgaaccaatccgaagtttcttgtttta |
24716771 |
T |
|
| Q |
127 |
aaccaaacacgccacac----gcacttacgcggtattatcctctacattccaccccattctctttatcctactccatcattttaaatatccattgacttc |
222 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716770 |
aaccaaacacgccacacgcacgcacgcacgcggtattatcctctacattccaccccattctctttatcctactccatcattttaaatatccattgacttc |
24716671 |
T |
|
| Q |
223 |
aaaac |
227 |
Q |
| |
|
||||| |
|
|
| T |
24716670 |
aaaac |
24716666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University