View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_22 (Length: 423)
Name: NF17742_low_22
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_22 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 6093 - 6329
Alignment:
| Q |
5 |
agtgagatgaaagaagaagggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgtgggcagcagagat |
104 |
Q |
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| T |
6093 |
agtgaaatgaaagaagaagggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgtgggcagcagagat |
6192 |
T |
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| Q |
105 |
tagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactcttt |
204 |
Q |
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| T |
6193 |
tagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactcttt |
6292 |
T |
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| Q |
205 |
ggtccaataaagagacagatcagcatccatagaatct |
241 |
Q |
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| T |
6293 |
ggtccaataaagagacagatcagcatccatagaatct |
6329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 92 - 261
Target Start/End: Complemental strand, 49238090 - 49237921
Alignment:
| Q |
92 |
gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcgg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |
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| T |
49238090 |
gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcgg |
49237991 |
T |
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| Q |
192 |
agagccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg |
261 |
Q |
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| T |
49237990 |
agagccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg |
49237921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 44285603 - 44285712
Alignment:
| Q |
307 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
406 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || || |||||||||||| |
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| T |
44285603 |
ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct |
44285702 |
T |
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| Q |
407 |
agttcttctc |
416 |
Q |
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| T |
44285703 |
agttcttctc |
44285712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 44070410 - 44070301
Alignment:
| Q |
307 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
406 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||| |
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| T |
44070410 |
ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct |
44070311 |
T |
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| Q |
407 |
agttcttctc |
416 |
Q |
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|||||||||| |
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| T |
44070310 |
agttcttctc |
44070301 |
T |
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