View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_23 (Length: 421)
Name: NF17742_low_23
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 33063793 - 33064196
Alignment:
| Q |
1 |
ccgactcttgattcgtgatagtaagcaccacatgatgaccccaaattaaacacgtaacaatattaatttatctatttttcgatatgcttt-tgttagata |
99 |
Q |
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| T |
33063793 |
ccgactcttgattcgtgatagtaagcaccacatgatgaccccaaattaaacacgtaacaatattaatttatctatttttcgatatgctttctgttagata |
33063892 |
T |
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| Q |
100 |
tggatgattggctaacaagtgtttaatttgatctttcgcatataacaaacacgattacatataattataaatgctcctatatatgattttaaaagattag |
199 |
Q |
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| T |
33063893 |
tggatgattggctaacaagtgtttaatttgatctttcgcatataacaaacacgattacatataattataaatgctcctatatatgattttaaaagattag |
33063992 |
T |
|
| Q |
200 |
ttcatatatcactttctccgacaaaacacacatgcataaactaaggttaaattttgtagtttcgaagaggatagtggagtggtttatggaacaggatgat |
299 |
Q |
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| T |
33063993 |
ttcatatatcactttctccgacaaaacacacatgcataaactaaggttaaattttgtagtttcgaagaggatagtggagtggtttatggaacaggatgat |
33064092 |
T |
|
| Q |
300 |
ccttacacatcaactttattgcgttggatatactgtttacaattgtnnnnnnnnnnnnnnnnntatttactgttttcgaacatggaaaagattaaatgga |
399 |
Q |
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| T |
33064093 |
ccttacacatcaactttattgcgttggatatactgtttacaattgtaaaaaagaaaacaaaaatatttactgttttcgaacatggaaaagattaaatgga |
33064192 |
T |
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| Q |
400 |
ctac |
403 |
Q |
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| T |
33064193 |
ctac |
33064196 |
T |
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