View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_26 (Length: 415)
Name: NF17742_low_26
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 2467651 - 2468028
Alignment:
| Q |
18 |
cagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcacttt |
117 |
Q |
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| T |
2467651 |
cagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcacttt |
2467750 |
T |
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| Q |
118 |
tcatctttcaccacctcacttatatcctcttccattttcccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacattt |
217 |
Q |
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| T |
2467751 |
ttatctttcaccacctcacttatatcctcttccatttttccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacattt |
2467850 |
T |
|
| Q |
218 |
ttcgggctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgt |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467851 |
ttcggtctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgt |
2467950 |
T |
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| Q |
318 |
gcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgat |
395 |
Q |
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| T |
2467951 |
gcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgat |
2468028 |
T |
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