View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17742_low_27 (Length: 410)
Name: NF17742_low_27
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 14248347 - 14247964
Alignment:
| Q |
11 |
atcatcaaaagacattgagtaaattctactgaattgaatattattggctttgtgcactcatcgtcacaatcgaacaaaattttcctagctagctaattca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14248347 |
atcaacaaaagacattgagtaaattctactgaattgaatattcttggctttgtgcactcatcgtcaccatcgaacaaaattttcctagctagctaattca |
14248248 |
T |
|
| Q |
111 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14248247 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
14248148 |
T |
|
| Q |
211 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggtgcaacacttag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14248147 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggcgcaacacttag |
14248048 |
T |
|
| Q |
311 |
tacaggacgtgaacctacctacccagccacaagactcatctcagcattgagcactaaaaatataacaatatcagtacacattgt |
394 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14248047 |
tacaggacgtgaacctacctccccagccacaagactcatctcagcattgagcactaaaaatataacaatatcagtacacattgt |
14247964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 14263398 - 14263349
Alignment:
| Q |
208 |
tgagttcctatcttagacttcatcttgctccatcccaataagggcgttga |
257 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
14263398 |
tgagttcctagtttagacttcatgttgctccatcccaattaggtcgttga |
14263349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University